Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12187 86.0 7e-12 >seq12187 Length=3801 Score = 86.0 bits (94), Expect = 7e-12 Identities = 194/290 (67%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 78867 GAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTT 78926 |||| |||| || | || | || ||||| |||| || || || | ||||||| ||| Sbjct 3414 GAAGGCATCTGCTAATCCGTTTACTCCGATTCCGATGGGACGATGTCTCATGTTGGACTT 3355 Query 78927 TCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGAC 78986 | || | | ||||| | ||| ||| || | || |||| ||| | |||||| Sbjct 3354 TTTAGCTTCAGGGACGGGGTAGTAATTCACATCAATTATACGATTCAAGTTCCACGTGAC 3295 Query 78987 GACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTT--TGATGAAAGTC 79044 || |||||||||| | || ||||||| | || | | | |||| | ||| Sbjct 3294 TTCCTTTGTCACCTCGTGTAGCTTTTGGAAATCATA--GACTCCGTCGGTGATATACGTC 3237 Query 79045 GGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATG 79104 || || | ||| ||||||||||| || ||| ||| || ||| ||| ||||||| Sbjct 3236 GGCAGCGCGATCGAGGCCAGGTTGCAAACCGCCACCTCATCTGGGGCTGAATACTCGATG 3177 Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 || || ||||| | || || ||||||||||| || | |||||| || || Sbjct 3176 ATCTCAGTGCAAAGGTTTGATGACTTGATGGTACCAAGGTTCTTTTGATT 3127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548356985694000