Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13424 125 8e-24 seq5295 95.1 1e-14 seq16300 86.0 7e-12 >seq13424 Length=872 Score = 125 bits (138), Expect = 8e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || ||||| || || || || || || || || || | |||| ||| | ||| Sbjct 772 CTGACTGGCAAAACAATCACACTGGAAGTCGAATCCTCCGACACTATTGACAATGTCAAG 713 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||||||||||||||| || || || ||||| || || ||| | || |||||||| Sbjct 712 GCCAAAATTCAGGACAAGGAAGGTATCCCGCCAGATCAACAACGTTTGATCTTTGCTGGA 653 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||||||| ||||| | ||| || || || || || || |||| |||||||| || || Sbjct 652 AAGCAACTGGAGGACGGTCGCACACTCGCGGATTACAACATCCAGAAGGAATCAACCCTC 593 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| || | ||| | || |||||| Sbjct 592 CATCTTGTGCTCCGTTTACGTGGTGGA 566 >seq5295 Length=6318 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 |||||||||||||||||||| | || ||||| || || || || | ||||||||||| Sbjct 823 GCTGGTAAGCAACTCGAGGACGGACGCACCCTTGCTGATTACAACATTCAAAAGGAATCG 764 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||| | ||| |||||||||| ||||| Sbjct 763 ACTCTTCATTTGGTCCTGCGTCTTCGTGGTGG 732 >seq16300 Length=959 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| || ||||| || || |||||||| || ||| | ||||| ||| | || Sbjct 212 CTCACCGGTAAAACTATCACCCTCGAGGTTGAATCTTCTGACACCATTGACAATGTCAAA 153 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTT 27538 || || ||||||||||||||||| || || |||||||| || ||| | |||| Sbjct 152 GCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAACGTTTGATTT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570135920662000