Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq13424 136 9e-27 seq16300 91.5 3e-13 >seq13424 Length=872 Score = 136 bits (150), Expect = 9e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| ||||||||||| ||||| ||||| || | |||||| ||||| || Sbjct 304 TGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGTCCATCCTCCAGTTGT 363 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || || ||||||||||| |||| |||||||| ||||| ||||| Sbjct 364 TTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGAATACCTTCCTTATCCTGAATCTTG 423 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| ||||| || || ||||| || || || || | ||||| || || || || Sbjct 424 GCTTTGACGTTGTCAATTGTGTCCGAAGACTCGACTTCCAAGGTGATGGTTTTACCAGTC 483 Query 211092 AGA 211094 ||| Sbjct 484 AGA 486 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || || || || |||||||| |||||||| || || | || || Sbjct 582 AGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCGAGTGTGCGACCGTCC 641 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| ||||| || || ||||| | |||||||| || || || | |||||||||||| Sbjct 642 TCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCCTTGTCC 701 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || || || || ||||| ||| ||| || || || ||||| || Sbjct 702 TGAATTTTGGCCTTGACATTGTCAATAGTGTCGGAGGATTCGACTTCCAGTGTGATTGTT 761 Query 211083 TTTCCCGTGAG 211093 || || || || Sbjct 762 TTGCCAGTCAG 772 >seq16300 Length=959 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||||||||| || || | || ||||||||||| ||||| ||| || || || ||| Sbjct 109 CGTTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATG 168 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACA 211107 |||||||| |||||||||||| ||||| || || || |||||| | | | || ||| Sbjct 169 GTGTCAGAAGATTCAACCTCGAGGGTGATAGTTTTACCGGTGAGACTATATGCAGACA 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158788506233375