Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017-
05-22] 24,475 sequences; 44,530,309 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq13424 118 7e-22
>seq13424
Length=872
Score = 118 bits (130), Expect = 7e-22
Identities = 134/177 (76%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAA 23690
|| || || ||||| ||||| || ||||| || ||| | |||||| |||| ||| | ||
Sbjct 772 CTGACTGGCAAAACAATCACACTGGAAGTCGAATCCTCCGACACTATTGACAATGTCAAG 713
Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750
| |||| || ||||| |||||| | |||||||||||||| ||||| || ||||| ||
Sbjct 712 GCCAAAA-TTCAGGACAAGGAAGGTATCCCGCCAGATCAACAACGTTTGATCTTTGCTGG 654
Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
|| |||||||| |||| ||||| | | ||||||||||| || || || || ||
Sbjct 653 AAAGCAACTGGAGGACGGTCGCACACTCGCGGATTACAACATCCAGAAGGAATCAAC 597
Score = 114 bits (126), Expect = 9e-21
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691
|| || || ||||| ||||| | ||||| || || ||||||| |||| | | |||
Sbjct 485 CTGACTGGTAAAACCATCACCTTGGAAGTCGAGTCTTCGGACACAATTGACAACGTCAAA 426
Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751
|| ||| || || |||||| | || || || |||||||| |||| ||||||||
Sbjct 425 GCCAAGATTCAGGATAAGGAAGGTATTCCCCCTGACCAACAGCGACTAATCTTTGCCGGT 366
Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811
||||||||||| || | ||| || | | ||||||||||| ||||| ||||| || |
Sbjct 365 AAACAACTGGAGGATGGACGAACACTTGCTGATTACAACATCCAAAAGGAGTCTACTCTT 306
Query 23812 CATTTAGTTTTAAGGTTGCGAGGAGG 23837
||||| || || | ||||| |||||
Sbjct 305 CATTTGGTATTGCGATTGCGCGGAGG 280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337908775433300
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |