Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13424 122 2e-22 seq5295 89.7 1e-12 >seq13424 Length=872 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| || ||||| || |||| |||||||| || | || | || || Sbjct 582 AGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCGAGTGTGCGACCGTCC 641 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| ||||| | |||||||| || ||||| |||||||||||||| Sbjct 642 TCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCCTTGTCC 701 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| || || ||||| |||| ||| || || | ||||| || Sbjct 702 TGAATTTTGGCCTTGACATTGTCAATAGTGTCGGAGGATTCGACTTCCAGTGTGATTGTT 761 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 762 TTGCCAGTCA 771 Score = 105 bits (116), Expect = 2e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || ||||||| |||||||| || | |||| ||||| || || || Sbjct 304 TGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGTCCATCCTCCAGTTGT 363 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| ||||| |||||||| || |||||||||||||| || || ||||| Sbjct 364 TTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGAATACCTTCCTTATCCTGAATCTTG 423 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || || || || ||||| || | || || || || ||||| || || || ||| Sbjct 424 GCTTTGACGTTGTCAATTGTGTCCGAAGACTCGACTTCCAAGGTGATGGTTTTACCAGTC 483 Query 225691 A 225691 | Sbjct 484 A 484 >seq5295 Length=6318 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 225581 AGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAG 225640 ||||||||||||| ||||| || ||||| |||||||| ||||| ||||| ||||||| Sbjct 893 AGATAAGTCGTTGCTGGTCTGGGGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 952 Query 225641 CTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||| ||||| | | ||| || || | ||||| ||||| ||||| Sbjct 953 TGTCGATTGTGTCGGCTGCTTCGACCTCGAGGGTGATAGTCTTACCCGT 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192157238985650