Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4231 104 3e-17 >seq4231 Length=3588 Score = 104 bits (114), Expect = 3e-17 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 |||||||| || || || |||| ||||||| || ||||| | |||| |||| Sbjct 1633 ATCTGAAAGCCATAGAAGCATCGGGCTTCTGCCGCTTGAACCTCTCCGCTGAATCTTTCA 1574 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||| ||||| || || |||||||| ||||||||| || ||||| || ||||| || Sbjct 1573 ATCAAGTTCTCGTTGACGATTCCATCTGAAGCAGCAAAGAAAGCTAAGACGTGTTTGATG 1514 Query 48582 AAATATTTTTCGTTGGAAGTCAGTTTATTC---CAGTCATTGATATCTTTTGATATATCT 48638 || | ||| |||| ||| | ||| || |||| ||||| ||||| | ||| Sbjct 1513 AAGTGTTTCTCGTCATCGTTCAACCTGTTCTCCCAATCATGCATATCCTTTGAGAGATCG 1454 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 | ||||||||||||||||| || ||||| ||| ||||| Sbjct 1453 ATCTCTTCAGCTGTCCAAAAGGAAGCCTCGGCTCGCTTATA 1413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694456274764000