Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13424 116 3e-21 >seq13424 Length=872 Score = 116 bits (128), Expect = 3e-21 Identities = 130/172 (76%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| |||||||||||||| |||||| ||| |||| ||||| ||||| || |||||| Sbjct 603 TCCTTCTGGATGTTGTAATCCGCGAGTGTGCGACCGTCCTCCAGTTGCTTTCCAGCAAAG 662 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 |||||||| || ||||||| || | ||||||||| ||| || || ||| || || Sbjct 663 ATCAAACGTTGTTGATCTGGCGGGATACCTTCCTTGTCCTGAATTTTGGCCTTGACATTG 722 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | || ||||||| |||||| || |||| || || || || || || || Sbjct 723 T--CAATAGTGTCGGAGGATTCGACTTCCAGTGTGATTGTTTTGCCAGTCAG 772 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 44099 TTTTATTTCATT---CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGG 44155 |||||| |||| || || | || || ||| |||| ||||| || |||||||||| Sbjct 265 TTTTATATCATGTGACCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGG 324 Query 44156 ATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGC 44215 ||||||||||| || ||| || | || ||||| || || ||||||||||| | ||| Sbjct 325 ATGTTGTAATCAGCAAGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGC 384 Query 44216 TGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGT 44274 || || || | || | ||||||||| ||| ||||| |||| | ||| | || || Sbjct 385 TGTTGGTCAGGGGGAATACCTTCCTTATCCTGAATCTT-GGCTTTGACGTTGTCAATTGT 443 Query 44275 GTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||| | || || || |||| || || || || || || || Sbjct 444 GTCCGAAGACTCGACTTCCAAGGTGATGGTTTTACCAGTCAG 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359883018801075