Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13424 138 3e-27 seq16300 100 7e-16 seq5295 89.7 1e-12 >seq13424 Length=872 Score = 138 bits (152), Expect = 3e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || || ||||| |||||| | || || || || ||||| || || |||||||| Sbjct 486 TCTGACTGGTAAAACCATCACCTTGGAAGTCGAGTCTTCGGACACAATTGACAACGTCAA 427 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 | ||||||||||| || ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 426 AGCCAAGATTCAGGATAAGGAAGGTATTCCCCCTGACCAACAGCGACTAATCTTTGCCGG 367 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 ||||| || || |||||| | || ||||| ||||| ||| ||||||| || || || || Sbjct 366 TAAACAACTGGAGGATGGACGAACACTTGCTGATTACAACATCCAAAAGGAGTCTACTCT 307 Query 178121 GCATCTTGTTTTGAGA 178136 ||| | || ||| || Sbjct 306 TCATTTGGTATTGCGA 291 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || ||||| ||||| || || || ||| ||| ||||| || || || ||||| Sbjct 772 CTGACTGGCAAAACAATCACACTGGAAGTCGAATCCTCCGACACTATTGACAATGTCAAG 713 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || ||||||||||| ||||| ||||| || || || ||||| | ||||| || ||| Sbjct 712 GCCAAAATTCAGGACAAGGAAGGTATCCCGCCAGATCAACAACGTTTGATCTTTGCTGGA 653 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || || || || || || | || || || ||||| ||| |||| || |||||||| || Sbjct 652 AAGCAACTGGAGGACGGTCGCACACTCGCGGATTACAACATCCAGAAGGAATCAACCCTC 593 Query 178122 CATCTTGT 178129 |||||||| Sbjct 592 CATCTTGT 585 >seq16300 Length=959 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| || ||||| |||||||||||||| ||| || |||||||| || || ||||| Sbjct 213 TCTCACCGGTAAAACTATCACCCTCGAGGTTGAATCTTCTGACACCATTGACAATGTCAA 154 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 153 AGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAACG 109 >seq5295 Length=6318 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| ||| | ||||| ||||| || || || Sbjct 1004 CTCACGGGTAAGACTATCACCCTCGAGGTCGAAGCAGCCGACACAATCGACAATGTGAAG 945 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053 |||||||| || || ||||| || || || ||||||||||||||||||| Sbjct 944 ACCAAGATTCAAGAAAAGGAAGGCATTCCCCCAGACCAGCAACGACTTATCT 893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203353726823150