Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq21405 91.5 1e-13 >seq21405 Length=5690 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 101866 GACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC 101925 ||||||||| |||| || | ||||||||| || | |||| ||||| | || | Sbjct 661 GACATAAAACTGACAAAACATATGACAAGGAGGAAGGGCCATCTTAGGTAAATCAGCTGG 602 Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985 ||||||||||| || | ||||| | ||| ||||| | ||| || | ||||| | Sbjct 601 ATTCCAAGCACTCAAGATGATCCTACGATCCGTAGGATGATGTTTGATTTTCTCAATACA 542 Query 101986 CTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTT--ATATTCT 102043 | ||| ||||| || || |||| || ||||||| | || || ||| | Sbjct 541 ATCTTTCAATTGATCGACCCCTTGACCGGTATAATCAT--CTTGGGCCGTTCGATAACAT 484 Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCT 102099 ||||||||||||| ||| || |||||||| | ||||| | ||||||||| |||| Sbjct 483 GCTCCGAAATGCCGCCATTGGAATCCATAGATCGGTCCTAAATCTCCTTCGGCTCT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361155400584509