Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 102 7e-17
>seq19309
Length=20099
Score = 102 bits (112), Expect = 7e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| || |||||| | || ||| ||||| || | |||||||| || |||||| |||||
Sbjct 2073 GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGTAAACAATTGGAA 2132
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
|| ||| | ||||||||||| ||||| ||||| |||||||||||| |||| ||
Sbjct 2133 GACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTCTTG 2192
Query 29175 CGATTACGAGGAGG 29188
|||||||| |||||
Sbjct 2193 CGATTACGTGGAGG 2206
Score = 96.9 bits (106), Expect = 3e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| ||||||||| | || ||| |||||| | || |||||||| || |||||||| |||
Sbjct 1207 GACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGAAAACAACTTGAA 1266
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170
||| || ||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1267 GATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTTCATTTGGT 1322
Score = 91.5 bits (100), Expect = 1e-13
Identities = 103/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| || ||||| | ||| |||||||||| | || || ||||| || ||||||||||||
Sbjct 1785 GACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAAACAACTGGAA 1844
Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172
||| || | || | || ||||||||||| ||||||||||| |||||||| | |||
Sbjct 1845 GATGGTCGCACAC--TCGCTGATTACAATATCCAGAAGGAATCAACTCTTCATCTTGTGC 1902
Query 29173 TACGATTACGAGGAGG 29188
| || |||| || ||
Sbjct 1903 TCCGTCTACGTGGTGG 1918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428222410513145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |