Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq19309 102 7e-17 >seq19309 Length=20099 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||| ||||| || | |||||||| || |||||| ||||| Sbjct 2073 GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGTAAACAATTGGAA 2132 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || ||| | ||||||||||| ||||| ||||| |||||||||||| |||| || Sbjct 2133 GACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTCTTG 2192 Query 29175 CGATTACGAGGAGG 29188 |||||||| ||||| Sbjct 2193 CGATTACGTGGAGG 2206 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||| |||||| | || |||||||| || |||||||| ||| Sbjct 1207 GACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGAAAACAACTTGAA 1266 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| || ||||||||||||| |||||||||||||| |||||||| |||| Sbjct 1267 GATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTTCATTTGGT 1322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||||||| | || || ||||| || |||||||||||| Sbjct 1785 GACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAAACAACTGGAA 1844 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || | || | || ||||||||||| ||||||||||| |||||||| | ||| Sbjct 1845 GATGGTCGCACAC--TCGCTGATTACAATATCCAGAAGGAATCAACTCTTCATCTTGTGC 1902 Query 29173 TACGATTACGAGGAGG 29188 | || |||| || || Sbjct 1903 TCCGTCTACGTGGTGG 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428222410513145