Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 111 1e-19
>seq19309
Length=20099
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| || |||||| | || ||| ||||| || | |||||||| || ||||||||||||
Sbjct 2073 GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGTAAACAATTGGAA 2132
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247
|| ||| | ||||||||||| ||||||||||| |||||||||||| |||| ||
Sbjct 2133 GACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTCTTG 2192
Query 25248 CGATTACGAGGAGG 25261
|||||||| |||||
Sbjct 2193 CGATTACGTGGAGG 2206
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 25059 ACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAA 25118
|| ||||| ||||| ||| ||| ||| | | || || | | | || |||||
Sbjct 1138 ACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAGGCC 1197
Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178
|| ||| || ||||||||| | || ||| |||||| | || |||||||| || |||
Sbjct 1198 AAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGAAAA 1257
Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238
||| | |||||| || ||||||||||||| ||||| |||||||| ||||||||
Sbjct 1258 CAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTTCAT 1317
Query 25239 ATGGT 25243
||||
Sbjct 1318 TTGGT 1322
Score = 82.4 bits (90), Expect = 6e-11
Identities = 101/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| || ||||| | ||| |||||||||| | || || ||||| || |||||| |||||
Sbjct 1785 GACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAAACAACTGGAA 1844
Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245
||| || | ||| || ||||||||||| || |||||||| |||||||| | |||
Sbjct 1845 GATGGTCGCACACTC--GCTGATTACAATATCCAGAAGGAATCAACTCTTCATCTTGTGC 1902
Query 25246 TACGATTACGAGGAGG 25261
| || |||| || ||
Sbjct 1903 TCCGTCTACGTGGTGG 1918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410687861695226
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |