Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq19309 111 1e-19 >seq19309 Length=20099 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || ||| ||||| || | |||||||| || |||||||||||| Sbjct 2073 GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGTAAACAATTGGAA 2132 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || ||| | ||||||||||| ||||||||||| |||||||||||| |||| || Sbjct 2133 GACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTCTTG 2192 Query 25248 CGATTACGAGGAGG 25261 |||||||| ||||| Sbjct 2193 CGATTACGTGGAGG 2206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 25059 ACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAA 25118 || ||||| ||||| ||| ||| ||| | | || || | | | || ||||| Sbjct 1138 ACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAGGCC 1197 Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 || ||| || ||||||||| | || ||| |||||| | || |||||||| || ||| Sbjct 1198 AAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGAAAA 1257 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||||| || ||||||||||||| ||||| |||||||| |||||||| Sbjct 1258 CAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTTCAT 1317 Query 25239 ATGGT 25243 |||| Sbjct 1318 TTGGT 1322 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||||||| | || || ||||| || |||||| ||||| Sbjct 1785 GACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAAACAACTGGAA 1844 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 ||| || | ||| || ||||||||||| || |||||||| |||||||| | ||| Sbjct 1845 GATGGTCGCACACTC--GCTGATTACAATATCCAGAAGGAATCAACTCTTCATCTTGTGC 1902 Query 25246 TACGATTACGAGGAGG 25261 | || |||| || || Sbjct 1903 TCCGTCTACGTGGTGG 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410687861695226