Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19309 93.3 4e-14 seq4808 93.3 4e-14 >seq19309 Length=20099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || |||||||| |||| |||||| || |||||| | | | |||||| Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| ||||| | || || ||||| || |||| || || || Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || |||| || || ||| ||||||||||| ||||| ||| |||| || || Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCA 1608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || ||||| || || | || |||||| | |||||| | | |||| |||| Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACG-TCAA 1771 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || ||||| | ||||| || ||||| ||| | || || ||||| || || | || || Sbjct 1772 GGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGG 1831 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| ||||| || | ||||| ||| || ||||| ||||||||||| | || || Sbjct 1832 TAAACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCT 1891 Query 40890 GCATCTAGTG 40899 ||||| ||| Sbjct 1892 TCATCTTGTG 1901 >seq4808 Length=7665 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 ||||| |||| ||||||||||||||||||||| | ||||| || ||||| ||| ||| Sbjct 6309 TTCGCGTCCATCTTTTGGCTCAAGAAACGCGGCTTGATGCCTGGTCTGACATTCTCAAAC 6368 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 ||| | |||||| | || || || || || ||||||||||||| | || ||| Sbjct 6369 GAGTTGATCTCCCGTGATGAAGGCCTCCACACCGACTTTGCCTGTCTACTTTTC 6422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515079066817840