Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 93.3 4e-14
seq4808 93.3 4e-14
>seq19309
Length=20099
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| || || |||||||| |||| |||||| || |||||| | | | ||||||
Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| ||||| ||||| | || || ||||| || |||| || || ||
Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || |||| || || ||| ||||||||||| ||||| ||| |||| || ||
Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCA 1608
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769
|| || || ||||| || || | || |||||| | |||||| | | |||| ||||
Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACG-TCAA 1771
Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829
|| ||||| | ||||| || ||||| ||| | || || ||||| || || | || ||
Sbjct 1772 GGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGG 1831
Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889
||||| ||||| || | ||||| ||| || ||||| ||||||||||| | || ||
Sbjct 1832 TAAACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCT 1891
Query 40890 GCATCTAGTG 40899
||||| |||
Sbjct 1892 TCATCTTGTG 1901
>seq4808
Length=7665
Score = 93.3 bits (102), Expect = 4e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145
||||| |||| ||||||||||||||||||||| | ||||| || ||||| ||| |||
Sbjct 6309 TTCGCGTCCATCTTTTGGCTCAAGAAACGCGGCTTGATGCCTGGTCTGACATTCTCAAAC 6368
Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199
||| | |||||| | || || || || || ||||||||||||| | || |||
Sbjct 6369 GAGTTGATCTCCCGTGATGAAGGCCTCCACACCGACTTTGCCTGTCTACTTTTC 6422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515079066817840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |