Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq21405 84.2 2e-11 >seq21405 Length=5690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 165/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 ||||||||||||| || | |||||| || || | ||||| || || | ||| | Sbjct 660 ACATAAAACTGACAAAACATATGACAAGGAGGAAGGGCCATCTTAGGTAAATCAGCTGGA 601 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTT-TGTGTGTATGGTATTAATT-- 97347 |||||||||| || | || || | ||| || || | ||| || || | | ||| Sbjct 600 TTCCAAGCACTCAAGATGATCCTACGATCCGTAGGATGATGTTTG-ATTTTCTCAATACA 542 Query 97348 ATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTT-GATATTC 97406 |||| || |||||||| || |||| || ||||| | ||| | | || |||| Sbjct 541 ATCT--TTCAATTGATCGACCCCTTGACCGGTATAATCAT-CTTGGGCCGTTCGATAACA 485 Query 97407 TGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCT 97463 |||||| ||||||| ||||||||||||||| | ||||| | |||||||| |||| Sbjct 484 TGCTCCGAAATGCCGCCATTGGAATCCATAGATCGGTCCTAAATCTCCTTCGGCTCT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346692037109630