Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq19309 116 6e-21 >seq19309 Length=20099 Score = 116 bits (128), Expect = 6e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124560 CTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAA 124619 || || ||||| || || || | ||| ||||| | ||||| ||| ||| | || Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194 Query 124620 CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGA 124679 || |||||||| ||||||||||| ||||| || |||||| | || || ||||| ||| Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254 Query 124680 AAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTG 124739 |||||| | || ||| | || || | | ||||| || ||||| || ||||| ||| | Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314 Query 124740 CATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| | ||| | || |||||||| Sbjct 1315 CATTTGGTACTCCGTCTGCGTGGTGGTAT 1343 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| || || ||||| || |||||||||||| | ||||| ||||||||||| Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || ||||||| | | || || || ||||| ||||| || || | || Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||| | || |||||||| Sbjct 1610 TTGGTTCTTCGTCTTCGTGGTGGTAT 1635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755250525411200