Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq19309 89.7 4e-13 >seq19309 Length=20099 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 45119 AATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGA 45178 |||| || |||||||| || || |||||| ||||||||||| ||| ||| || Sbjct 2197 AATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 2138 Query 45179 TCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCC 45238 |||| |||| |||||| || || || || || ||||||||||| || || | ||| ||| Sbjct 2137 CCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCC 2078 Query 45239 TTGTCCGCAATTTT 45252 |||||| ||| || Sbjct 2077 TTGTCCTGAATCTT 2064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||| ||||||||||||||||| || ||| |||| || Sbjct 1614 ACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTTCGACCGTCTTCA 1555 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 ||||| ||||| || || || | || ||||| || ||||| | |||||||||||| Sbjct 1554 AGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCCTTGTC 1499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394970430871939