Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 86.0 5e-12
>seq19309
Length=20099
Score = 86.0 bits (94), Expect = 5e-12
Identities = 144/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| |||| || | |||| |||||| || || || |||||||||||||| |||||
Sbjct 2206 CCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 2147
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| |||| | |||||||||||||| || ||| |||| | || ||||| || ||
Sbjct 2146 AGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGG 2087
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||||| || ||| | | || ||||| | ||| || || | ||||
Sbjct 2086 ATACCTTCCTTGTCCTGAATCT-TGGCTTTGACATTGTCAATTGTATCCGATGACTCGAC 2028
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCA 18303
||| | ||||||| | || || ||||
Sbjct 2027 TTCGAGGGTGATGGTCTTACCAGTCA 2002
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| |||| |||||| || || ||||| |||||||||||||| ||
Sbjct 1632 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCG 1573
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || ||||| | ||| || || ||| ||||||| | ||||||||| ||
Sbjct 1572 AGAGTTCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGG 1513
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| || ||||| || ||| | |||||| | ||| ||||| || ||| |
Sbjct 1512 ATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACT 1453
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAA 18304
|| | |||||| | || || |||||
Sbjct 1452 TCGAGAGTGATGGTCTTTCCAGTCAA 1427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379243402594455
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |