Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4808 93.3 4e-14 seq21128 87.8 2e-12 seq19309 87.8 2e-12 seq9033 86.0 6e-12 >seq4808 Length=7665 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 58019 CTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAA 58078 ||| ||| | || |||||| | |||||||||||| ||||||| || ||||| || || Sbjct 6308 CTTCGCGTCCATCTTTTGGCTCAAGAAACGCGGCTTGATGCCTGGTCTGACATTCTCAAA 6367 Query 58079 CGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA 58138 ||||||||| || || || || || ||||| || || ||||| || ||| | | |||||| Sbjct 6368 CGAGTTGATCTCCCGTGATGAAGGCCTCCACACCGACTTTGCCTGTCTACTTTTCTCTCA 6427 Query 58139 C 58139 | Sbjct 6428 C 6428 >seq21128 Length=23319 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || |||||||| |||||||| || || | | || |||||||||||||| || Sbjct 14351 TTGTCAACCGTAAACTGAATGGCGTTAGCTGCGGCCCTAGTACGAAGATAATACATCCCA 14410 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATC 22201 ||||||| |||| ||||||| || ||||| || ||| Sbjct 14411 GTCTTCAAACCCTTCTTCCATGCATAAAAGTGCATC 14446 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Plus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || ||| |||||||| |||| || ||| ||||||||| || ||| Sbjct 14951 GAGGTGTAAGGCTCAAAACATTCATTGAAACCCATGATTTGACTGGTCGAAGCAGTAGGC 15010 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCG--TGCTTTGAAATTTTACTCTTGAGCA 22619 |||||||| | || || |||||||||| |||| || || || ||| || || || | Sbjct 15011 ATCGGCGCAAGCAAAAGTGAGTTTCTCAGGCCGGTAGCCTT-AATCTTTTCT-TTCAG-A 15067 Query 22620 TCG-ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 ||| ||| |||||| ||||| || || || | ||||||||||||| || Sbjct 15068 TCGTCCCATGTCCACAGGTCGGAGGGTGTGAC---GCCCCACATATCGTACTG 15117 >seq19309 Length=20099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272 |||||| || || || |||||| |||| || || | || || | | || | ||||| Sbjct 2000 TCTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAA 2059 Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332 | | || |||||||||||| | || || ||||| ||||| |||| || || || Sbjct 2060 AGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGG 2119 Query 31333 CAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACT 31390 ||||| ||||||||| | | ||| || |||||| ||||||||||| || || ||| Sbjct 2120 TAAACAATTGGAAGACGGGCGAACACT-TG-CCGATTACAACATTCAAAAGGAGTCTACT 2177 Query 31391 CTTCATCTGGT 31401 ||||| |||| Sbjct 2178 CTTCACTTGGT 2188 >seq9033 Length=2832 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || ||| |||||||| |||| || ||| ||||||||| || ||| Sbjct 2657 GAGGTGTAAGGCTCAAAACATTCATTGAACCCCATGATTTGACTGGTCGAAGCAGTAGGC 2598 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGT--GCTTTGAAATTTTACTCTTGAGCA 22619 || ||||| | | || |||||||| |||||| || |||| |||| || || || | Sbjct 2597 ATTGGCGCAAGCGAAAGTGAGTTTCTTAAGCCGGTAGCCTTGATTTTTT-CT-TTCAG-A 2541 Query 22620 TCGACC-AGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 ||| || | | |||||| ||||| || || || | |||||||||||||||| Sbjct 2540 TCGTCCCATTTCCACAGGTCGGAAGGTGTGAC---GCCCCACATATCGTATTG 2491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445645157111280