Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4808 93.3 4e-14
seq21128 87.8 2e-12
seq19309 87.8 2e-12
seq9033 86.0 6e-12
>seq4808
Length=7665
Score = 93.3 bits (102), Expect = 4e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 58019 CTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAA 58078
||| ||| | || |||||| | |||||||||||| ||||||| || ||||| || ||
Sbjct 6308 CTTCGCGTCCATCTTTTGGCTCAAGAAACGCGGCTTGATGCCTGGTCTGACATTCTCAAA 6367
Query 58079 CGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA 58138
||||||||| || || || || || ||||| || || ||||| || ||| | | ||||||
Sbjct 6368 CGAGTTGATCTCCCGTGATGAAGGCCTCCACACCGACTTTGCCTGTCTACTTTTCTCTCA 6427
Query 58139 C 58139
|
Sbjct 6428 C 6428
>seq21128
Length=23319
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165
||||| || |||||||| |||||||| || || | | || |||||||||||||| ||
Sbjct 14351 TTGTCAACCGTAAACTGAATGGCGTTAGCTGCGGCCCTAGTACGAAGATAATACATCCCA 14410
Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATC 22201
||||||| |||| ||||||| || ||||| || |||
Sbjct 14411 GTCTTCAAACCCTTCTTCCATGCATAAAAGTGCATC 14446
Score = 82.4 bits (90), Expect = 7e-11
Identities = 126/173 (73%), Gaps = 9/173 (5%)
Strand=Plus/Plus
Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561
|| ||| | || || ||| |||||||| |||| || ||| ||||||||| || |||
Sbjct 14951 GAGGTGTAAGGCTCAAAACATTCATTGAAACCCATGATTTGACTGGTCGAAGCAGTAGGC 15010
Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCG--TGCTTTGAAATTTTACTCTTGAGCA 22619
|||||||| | || || |||||||||| |||| || || || ||| || || || |
Sbjct 15011 ATCGGCGCAAGCAAAAGTGAGTTTCTCAGGCCGGTAGCCTT-AATCTTTTCT-TTCAG-A 15067
Query 22620 TCG-ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671
||| ||| |||||| ||||| || || || | ||||||||||||| ||
Sbjct 15068 TCGTCCCATGTCCACAGGTCGGAGGGTGTGAC---GCCCCACATATCGTACTG 15117
>seq19309
Length=20099
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/191 (71%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272
|||||| || || || |||||| |||| || || | || || | | || | |||||
Sbjct 2000 TCTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAA 2059
Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332
| | || |||||||||||| | || || ||||| ||||| |||| || || ||
Sbjct 2060 AGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGG 2119
Query 31333 CAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACT 31390
||||| ||||||||| | | ||| || |||||| ||||||||||| || || |||
Sbjct 2120 TAAACAATTGGAAGACGGGCGAACACT-TG-CCGATTACAACATTCAAAAGGAGTCTACT 2177
Query 31391 CTTCATCTGGT 31401
||||| ||||
Sbjct 2178 CTTCACTTGGT 2188
>seq9033
Length=2832
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/173 (73%), Gaps = 9/173 (5%)
Strand=Plus/Minus
Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561
|| ||| | || || ||| |||||||| |||| || ||| ||||||||| || |||
Sbjct 2657 GAGGTGTAAGGCTCAAAACATTCATTGAACCCCATGATTTGACTGGTCGAAGCAGTAGGC 2598
Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGT--GCTTTGAAATTTTACTCTTGAGCA 22619
|| ||||| | | || |||||||| |||||| || |||| |||| || || || |
Sbjct 2597 ATTGGCGCAAGCGAAAGTGAGTTTCTTAAGCCGGTAGCCTTGATTTTTT-CT-TTCAG-A 2541
Query 22620 TCGACC-AGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671
||| || | | |||||| ||||| || || || | ||||||||||||||||
Sbjct 2540 TCGTCCCATTTCCACAGGTCGGAAGGTGTGAC---GCCCCACATATCGTATTG 2491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445645157111280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |