Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 105 5e-18
>seq19309
Length=20099
Score = 105 bits (116), Expect = 5e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| |||||||| ||||| || || || |||||||||||| || | | | |||||
Sbjct 1322 ACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCA 1263
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| |||||| || || | || | |||||||||||| |||||| ||||||||||| |
Sbjct 1262 AGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGA 1203
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| ||| | || ||||||||| | ||| || || | ||| ||||| ||
Sbjct 1202 ATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTG 1143
Query 15335 CCTGTCAG 15342
|| || ||
Sbjct 1142 CCGGTGAG 1135
Score = 100 bits (110), Expect = 2e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 15146 AATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTC 15205
|||| || || || ||||| || || || ||||| |||||||||||| || ||| |
Sbjct 2197 AATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 2138
Query 15206 GCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCT 15265
||||||| |||||||| || || | || || || |||||||| ||| || |||||
Sbjct 2137 CCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCC 2078
Query 15266 TTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGT 15324
||||| ||| ||| || ||| | || || ||||| | || || || || | |||
Sbjct 2077 TTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTATC-CGATGACTCGACTTCGAGGGT 2019
Query 15325 AATGGTTTTACCTGTCAGA 15343
||||| ||||| ||||||
Sbjct 2018 GATGGTCTTACCAGTCAGA 2000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362083154490219
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |