Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq19309 132 1e-25 >seq19309 Length=20099 Score = 132 bits (146), Expect = 1e-25 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||||| ||||||| ||||||||| ||||| ||||| Sbjct 1602 GTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTTCGACCGTCTTCAAGTTGCTTTCCT 1543 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||||||||| || || || || || |||||||| || || Sbjct 1542 GCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCCTTGTCTTGAATCTTGGCCTTG 1483 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | || ||| | ||| || || || || || ||||| ||||| Sbjct 1482 ACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGAGTGATGGTCTTTCCAGT 1430 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | || || ||||| | || ||||| ||||| ||||| || ||| Sbjct 1921 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCA 1862 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| ||||| |||||||| ||||||||||| || | |||||||| || Sbjct 1861 GCGAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGG 1802 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || || || || | || ||| | ||| Sbjct 1801 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCG 1742 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||| || ||||| || ||||| ||||| Sbjct 1741 ACCTCCAGCGTAATTGTTTTACCGGTAAG 1713 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| | || ||||| |||||||| || || || | || || | || ||| Sbjct 1325 AGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCT 1266 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||||||||| ||||| || || | ||||| || || || || |||||||| || Sbjct 1265 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCT 1206 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||||||| || ||| ||||| || || || ||| Sbjct 1205 TGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTC 1146 Query 104528 TTACCAGTAAG 104538 || || || || Sbjct 1145 TTGCCGGTGAG 1135 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || || || | || |||| |||||||| | |||||| || Sbjct 2176 GTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCGTCTTCCAATTGTTTACCT 2117 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| | |||||| || || || || ||||| || ||||||||||| ||||| Sbjct 2116 GCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTTGTCCTGAATCTTGGCTTTG 2057 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||| || | ||||| | || || || || || || ||||||||||| || Sbjct 2056 ACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGATGGTCTTACCAGTCAG 2001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151077404878372