Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq14910 82.4 9e-11 seq14909 82.4 9e-11 >seq14910 Length=9531 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 |||||||||| || ||||||||||| || || || ||||| || ||| || Sbjct 4696 ATACCTGAAACGGGAGATAAGTTTGCATCAAGACATGGACAGAAAGGAACCGTTGGAATC 4755 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 | ||| | |||||||||||||| ||||| || || || || ||| |||||||| Sbjct 4756 TTATATAGACAAGAAGATATGCCATTTACCTCTGAAGGGATTTGTCCAGATATTATTATT 4815 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 || || ||||| ||||| |||||||||| || Sbjct 4816 AATCCTCATGCGATTCCATCTCGAATGACGATT 4848 >seq14909 Length=9444 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 |||||||||| || ||||||||||| || || || ||||| || ||| || Sbjct 4696 ATACCTGAAACGGGAGATAAGTTTGCATCAAGACATGGACAGAAAGGAACCGTTGGAATC 4755 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 | ||| | |||||||||||||| ||||| || || || || ||| |||||||| Sbjct 4756 TTATATAGACAAGAAGATATGCCATTTACCTCTGAAGGGATTTGTCCAGATATTATTATT 4815 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 || || ||||| ||||| |||||||||| || Sbjct 4816 AATCCTCATGCGATTCCATCTCGAATGACGATT 4848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595709930264400