Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq19309 111 1e-19 >seq19309 Length=20099 Score = 111 bits (122), Expect = 1e-19 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | |||||||| |||||||| | |||||| |||||||| | ||| |||||| | Sbjct 2206 CCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGG-C 2148 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| | || |||| ||||| || |||||||||||| || || ||||| | Sbjct 2147 A-AGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTG 2089 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||| ||||| | ||| || || ||||| | | | || || | |||| Sbjct 2088 GGATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGA 2029 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 | || | |||||||| || ||||| ||| Sbjct 2028 CTTCGAGGGTGATGGTCTTACCAGTCAGA 2000 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| |||||||| || | ||| |||||| || ||| ||| || Sbjct 1322 ACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCA 1263 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||||||| ||||||| | | ||| || ||||| ||||||||||||||||| | | Sbjct 1262 AGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGA 1203 Query 94919 ATTTTTGCCTTGAC 94932 || || |||||||| Sbjct 1202 ATCTTGGCCTTGAC 1189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448169270397240