Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 111 1e-19
>seq19309
Length=20099
Score = 111 bits (122), Expect = 1e-19
Identities = 152/209 (73%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| | |||||||| |||||||| | |||||| |||||||| | ||| |||||| |
Sbjct 2206 CCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGG-C 2148
Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| |||||| | || |||| ||||| || |||||||||||| || || ||||| |
Sbjct 2147 A-AGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTG 2089
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| |||||||| ||||| | ||| || || ||||| | | | || || | ||||
Sbjct 2088 GGATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGA 2029
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
| || | |||||||| || ||||| |||
Sbjct 2028 CTTCGAGGGTGATGGTCTTACCAGTCAGA 2000
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || | ||| |||||||| || | ||| |||||| || ||| ||| ||
Sbjct 1322 ACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCA 1263
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| ||||||||| ||||||| | | ||| || ||||| ||||||||||||||||| | |
Sbjct 1262 AGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGA 1203
Query 94919 ATTTTTGCCTTGAC 94932
|| || ||||||||
Sbjct 1202 ATCTTGGCCTTGAC 1189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448169270397240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |