Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18736 120 5e-23 seq20254 100 4e-17 seq13875 100 4e-17 seq19178 91.5 2e-14 seq21469 84.2 3e-12 >seq18736 Length=10992 Score = 120 bits (132), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | ||||| ||||||||||| |||||||| ||||||||||| ||||| || || Sbjct 6971 AGATCT-TGCGAGACAACATCCAAGGTATCACCAAACCAGCTATCCGACGTCTTGCCCGA 6913 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| ||||| ||| ||||||| | |||| ||||| | |||| |||| | || Sbjct 6912 AGAGGTGGTGTCAAACGTATCTCTGGTCTTATCTACGAAGAAACCCGTGGTGTTCTCAAA 6853 Query 16568 ATCTTCCTCAAGACCGTTATC 16588 |||||||| ||| ||||||| Sbjct 6852 ATCTTCCTTGAGAACGTTATC 6832 >seq20254 Length=20258 Score = 100 bits (110), Expect = 4e-17 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || |||||||| ||||| ||||| || || || |||||||| | || || Sbjct 1465 AGATCT-TGCGTGATAACATTCAAGGTATCACTAAACCTGCAATCCGTCGATTAGCACGA 1523 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | || || ||||| ||| |||||||| | | || ||||| | || | |||||| ||| Sbjct 1524 AGAGGAGGTGTCAAACGTATCTCTGGACTCATTTACGAAGAAACCCGAGGTGTTTTAAAG 1583 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||||||||| ||| ||||| | ||| | || ||||||||| Sbjct 1584 ATCTTCCTCGAGAATGTTATTCGAGATTCAGTCACATATACCGAG 1628 >seq13875 Length=2437 Score = 100 bits (110), Expect = 4e-17 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || |||||||| ||||| ||||| || || || |||||||| | || || Sbjct 1465 AGATCT-TGCGTGATAACATTCAAGGTATCACTAAACCTGCAATCCGTCGATTAGCACGA 1523 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | || || ||||| ||| |||||||| | | || ||||| | || | |||||| ||| Sbjct 1524 AGAGGAGGTGTCAAACGTATCTCTGGACTCATTTACGAAGAAACCCGAGGTGTTTTAAAG 1583 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||||||||| ||| ||||| | ||| | || ||||||||| Sbjct 1584 ATCTTCCTCGAGAATGTTATTCGAGATTCAGTCACATATACCGAG 1628 >seq19178 Length=16216 Score = 91.5 bits (100), Expect = 2e-14 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 16440 GTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTC 16499 |||| || | | |||||| || ||||||||||||||||| || || ||||||||||| Sbjct 1818 GTCACCGTAAAATTCTTCGTGACAACATCCAAGGAATCACAAAACCTGCTATCCGTCGAT 1759 Query 16500 TGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATG 16559 |||| || | || || || ||||| |||| || || | |||||||||| ||| | || Sbjct 1758 TGGCACGAAGAGGAGGTGTGAAGCGAATCTCAGGTTTAATTTATGAAGAGACTCGAGCTG 1699 Query 16560 TTTTGAAG 16567 || | ||| Sbjct 1698 TTCTAAAG 1691 >seq21469 Length=8726 Score = 84.2 bits (92), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| |||||| |||||||||||||| ||||| || || || || | ||| | ||| | Sbjct 3840 AGAT-TCTTCGTGATAACATCCAAGGTATCACTAAACCTGCCATTAGACGTTTAGCTAGA 3782 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| |||||||| ||| |||| || ||| | ||||| |||| Sbjct 3781 CGTGGAGGAGTCAAACGTATCTCCGGTTTGATTTATGAGGAGA 3739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79055305593987