Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq19418 104 4e-17 >seq19418 Length=20221 Score = 104 bits (114), Expect = 4e-17 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 193968 TCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATC 194027 ||||||||| |||| || ||||| || || ||||| || | || | || ||||| Sbjct 17362 TCTCCAAGACGAGGAAGAACGTTTGTGACACGCAAGATCACCCGAGCAGTGGCTGAGATC 17303 Query 194028 TCTGTTGGATTACAGAAGATT--CTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGG 194085 | || || || | || ||||||||||| || | ||| || || ||||||| Sbjct 17302 AGCTTAGGCTTGCA--ATCTTGCCTTTATCTTGGAAACTTGTCTGCCAAAAGAGATTGGG 17245 Query 194086 GACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATG 194145 | || || || ||||||||||||| |||||| |||||| ||||| |||| | | || | Sbjct 17244 GTCATGCCAAAGATTATGTTGAAGGCATGTGGAGAATGTTACAACAAGATGCAGCAGAAG 17185 Query 194146 ATTATGTGATTGCTACAGGTGAA 194168 |||||||| | ||||| |||||| Sbjct 17184 ATTATGTGTTAGCTACTGGTGAA 17162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807335555080040