Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq19309 102 8e-17 >seq19309 Length=20099 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || || |||| || || || | || |||||||||||||||||||||||| Sbjct 2206 CCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 2147 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||| || | || || ||||| ||||||| ||||| ||||| || ||| Sbjct 2146 AGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGG 2087 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | || |||| | || | ||||| | ||||||| Sbjct 2086 ATACCTTCCTTGTC-CTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGAC 2028 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGA 131214 |||| ||| | ||| ||||| || ||| Sbjct 2027 TTCGAGGGTGATGGTCTTACCAGTCAGA 2000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || ||||| | || || ||||| ||||||||||||||| | Sbjct 1340 CCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCC 1281 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || || || || || |||| | ||| || ||||| || || Sbjct 1280 AGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGA 1221 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| || || ||||| | || | ||||||| || || | Sbjct 1220 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACC 1161 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | ||| || ||||| || Sbjct 1160 TCGAGGGTGATGGTCTTGCCGGTGAG 1135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471884418418560