Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq13107 118 7e-22
seq10073 116 2e-21
seq19309 100 2e-16
>seq13107
Length=898
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||| ||||||||| |||||||||||||||||| | ||||| ||
Sbjct 670 AAGCCCGTTCCCTTGACTGTGGTTTTGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 729
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||| |||||||||||||||||||||
Sbjct 730 TAATCCATTCATGTGCGTCACTAATTAGATGACGA 764
>seq10073
Length=1102
Score = 116 bits (128), Expect = 2e-21
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957
|||||||||||||| ||||||||| |||||||||||||||||| | ||||| |||
Sbjct 1102 AGCCCGTTCCCTTGACTGTGGTTTTGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTT 1043
Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||| |||||| |||||||||||||||||||||
Sbjct 1042 AATCCATTCATGTGCGTCACTAATTAGATGACGA 1009
>seq19309
Length=20099
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||| | ||||||||||||||| ||||| ||||| |||||||| |
Sbjct 1342 TACCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGG 1283
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|| ||| | || || | ||||||||||||||| || || |||||||| || | |
Sbjct 1282 CCAGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTG 1223
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||||||||| ||| || ||| ||||| | | ||||| | |||||
Sbjct 1222 GAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAA 1163
Query 38269 CTTCTAATGTAATAGTTTTACCCGT 38293
| || | || || || || || ||
Sbjct 1162 CCTCGAGGGTGATGGTCTTGCCGGT 1138
Score = 84.2 bits (92), Expect = 1e-11
Identities = 144/208 (69%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | ||| | ||||||||| ||||| || ||||||||||
Sbjct 1922 CATT-CCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAAT 1864
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
||| | || | || || | |||||| || ||||| || || ||||||||||| |
Sbjct 1863 CAGCGAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTG 1804
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
||| | |||||| |||||| ||||| ||| || || | || || || ||
Sbjct 1803 GGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATT 1744
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGT 38293
| || || | ||||| |||||||| ||
Sbjct 1743 CGACCTCCAGCGTAATTGTTTTACCGGT 1716
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 38100 AAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGT 38159
|| ||||| ||||| |||||||| |||||||||||| |||||||| | | ||
Sbjct 2197 AATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 2138
Query 38160 TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCT 38219
|||| || |||||||| || ||||| |||| || ||||| || | |||| |||||
Sbjct 2137 CCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCC 2078
Query 38220 TTGTCCATAATTTT 38233
|||||| ||| ||
Sbjct 2077 TTGTCCTGAATCTT 2064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334858376084729
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |