Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq13107 118 7e-22 seq10073 116 2e-21 seq19309 100 2e-16 >seq13107 Length=898 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| ||||||||| |||||||||||||||||| | ||||| || Sbjct 670 AAGCCCGTTCCCTTGACTGTGGTTTTGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 729 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| ||||||||||||||||||||| Sbjct 730 TAATCCATTCATGTGCGTCACTAATTAGATGACGA 764 >seq10073 Length=1102 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 |||||||||||||| ||||||||| |||||||||||||||||| | ||||| ||| Sbjct 1102 AGCCCGTTCCCTTGACTGTGGTTTTGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTT 1043 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||| ||||||||||||||||||||| Sbjct 1042 AATCCATTCATGTGCGTCACTAATTAGATGACGA 1009 >seq19309 Length=20099 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||||||||||||| ||||| ||||| |||||||| | Sbjct 1342 TACCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGG 1283 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || ||| | || || | ||||||||||||||| || || |||||||| || | | Sbjct 1282 CCAGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTG 1223 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||| || ||| ||||| | | ||||| | ||||| Sbjct 1222 GAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAA 1163 Query 38269 CTTCTAATGTAATAGTTTTACCCGT 38293 | || | || || || || || || Sbjct 1162 CCTCGAGGGTGATGGTCTTGCCGGT 1138 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||| | ||||||||| ||||| || |||||||||| Sbjct 1922 CATT-CCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAAT 1864 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | || | || || | |||||| || ||||| || || ||||||||||| | Sbjct 1863 CAGCGAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTG 1804 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||| |||||| ||||| ||| || || | || || || || Sbjct 1803 GGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATT 1744 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGT 38293 | || || | ||||| |||||||| || Sbjct 1743 CGACCTCCAGCGTAATTGTTTTACCGGT 1716 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38100 AAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGT 38159 || ||||| ||||| |||||||| |||||||||||| |||||||| | | || Sbjct 2197 AATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 2138 Query 38160 TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCT 38219 |||| || |||||||| || ||||| |||| || ||||| || | |||| ||||| Sbjct 2137 CCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCC 2078 Query 38220 TTGTCCATAATTTT 38233 |||||| ||| || Sbjct 2077 TTGTCCTGAATCTT 2064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334858376084729