Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq19309 125 6e-24 >seq19309 Length=20099 Score = 125 bits (138), Expect = 6e-24 Identities = 144/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAG 25079 ||||| || ||||||| |||| || || || || || || || || || || | | Sbjct 1138 ACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGA--CAATGTCAAGG 1195 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 | || | ||| ||||||||||| |||||||| |||||||| || | || |||||||| Sbjct 1196 CCAAGATTCAA-GACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 |||||| | ||||||| ||||| ||| ||||||||| ||||| || |||||||| || Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314 Query 25200 CATTTAGTGCT 25210 ||||| || || Sbjct 1315 CATTTGGTACT 1325 Score = 114 bits (126), Expect = 1e-20 Identities = 141/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---A 25077 |||| ||||| ||||||| ||||||| ||||| || || || || || || || | Sbjct 2002 TGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGA--CAATGTCAA 2059 Query 25078 AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 ||| || | ||| ||||| ||||| || ||||| ||||||||||| | || ||||| | Sbjct 2060 AGCCAAGATTCAG-GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAG 2118 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 | |||||||| ||||| | || || | | ||||||||| |||||||| || || || | Sbjct 2119 GTAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTC 2178 Query 25198 TACATTTAGT 25207 | || || || Sbjct 2179 TTCACTTGGT 2188 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 ||||||||| | || || | || || || || || ||||| ||||| | ||| Sbjct 1716 ACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAGGCC 1775 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| ||||| ||||| ||||| || || ||||| || | |||||||| || ||| Sbjct 1776 AAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAAA 1835 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | ||||||| |||||| | | ||||||||||| || || ||||| || || ||| Sbjct 1836 CAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTTCAT 1895 Query 25203 TTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||| | ||| | || |||| Sbjct 1896 CTTGTGCTCCGTCTACGTGGTGGAA 1920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433213086695585