Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 125 6e-24
>seq19309
Length=20099
Score = 125 bits (138), Expect = 6e-24
Identities = 144/191 (75%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAG 25079
||||| || ||||||| |||| || || || || || || || || || || | |
Sbjct 1138 ACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGA--CAATGTCAAGG 1195
Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139
| || | ||| ||||||||||| |||||||| |||||||| || | || ||||||||
Sbjct 1196 CCAAGATTCAA-GACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254
Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199
|||||| | ||||||| ||||| ||| ||||||||| ||||| || |||||||| ||
Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314
Query 25200 CATTTAGTGCT 25210
||||| || ||
Sbjct 1315 CATTTGGTACT 1325
Score = 114 bits (126), Expect = 1e-20
Identities = 141/190 (74%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---A 25077
|||| ||||| ||||||| ||||||| ||||| || || || || || || || |
Sbjct 2002 TGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGA--CAATGTCAA 2059
Query 25078 AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137
||| || | ||| ||||| ||||| || ||||| ||||||||||| | || ||||| |
Sbjct 2060 AGCCAAGATTCAG-GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAG 2118
Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197
| |||||||| ||||| | || || | | ||||||||| |||||||| || || || |
Sbjct 2119 GTAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTC 2178
Query 25198 TACATTTAGT 25207
| || || ||
Sbjct 2179 TTCACTTGGT 2188
Score = 113 bits (124), Expect = 4e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
||||||||| | || || | || || || || || ||||| ||||| | |||
Sbjct 1716 ACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAGGCC 1775
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|||||| ||||| ||||| ||||| || || ||||| || | |||||||| || |||
Sbjct 1776 AAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAAA 1835
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
||| | ||||||| |||||| | | ||||||||||| || || ||||| || || |||
Sbjct 1836 CAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTTCAT 1895
Query 25203 TTAGTGCTAAGGCTAAGAGGAGGAA 25227
| ||||| | ||| | || ||||
Sbjct 1896 CTTGTGCTCCGTCTACGTGGTGGAA 1920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433213086695585
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |