Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4808 129 7e-25 >seq4808 Length=7665 Score = 129 bits (142), Expect = 7e-25 Identities = 163/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || ||||| ||||| ||||| | || || ||| | ||||| || Sbjct 5944 AATTTGGAAGCCATAGAAGCATCTGGCTTCAGCCGCTTGAACCTCTCCACTGAATCTTTC 5885 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 | | ||||| ||||| || ||||| || || ||||| ||||| || | ||| || || Sbjct 5884 AATCAAGTTTTCGTTGACAATTCCATCCGAAGCAGCAAAGAAAGCTAAGACATGTTTGAT 5825 Query 93535 AAAATGTTTCTCATCATC-TTTAAGC--TTATCCCAATCGGATAGATCTTTTGAAAGATC 93591 ||| |||||||||||||| || || | || ||||||||| | ||| || |||||||| Sbjct 5824 AAAGTGTTTCTCATCATCATTCAATCTGTTCTCCCAATCGTGCATATCCTTCGAAAGATC 5765 Query 93592 GACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 || ||||||| | ||||| || || || || ||| ||||| Sbjct 5764 GATTTCTTCGGCTGTCCAGAATGAAGCCTCGGCTCGCTTGTA 5723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556709340823160