Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 143 2e-29
>seq19309
Length=20099
Score = 143 bits (158), Expect = 2e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || ||| | |||||||| | ||| || ||||
Sbjct 1138 ACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAGGCC 1197
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||||||||| || ||||||||||| || ||||||||||| || |||||||| |||
Sbjct 1198 AAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGAAAA 1257
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | || ||| |||||| | |||||||||||||||| || |||||||| | |||
Sbjct 1258 CAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTTCAT 1317
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| || | || |||| || |||
Sbjct 1318 TTGGTACTCCGTCTGCGTGGTGGT 1341
Score = 127 bits (140), Expect = 2e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 22239 TTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAA 22298
||| || || || || ||||||| ||||| ||| || |||| || | ||| || ||||
Sbjct 1426 TTTGACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAA 1485
Query 22299 ACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358
|| |||||||||||||||||||| || || ||||||||||||||||| ||||| ||
Sbjct 1486 GGCCAAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGG 1545
Query 22359 CAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCAT 22418
|| || | || || || || || | || ||||||||||| ||||| |||||| |
Sbjct 1546 AAAGCAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCT 1605
Query 22419 ACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || ||| | || | || || |||
Sbjct 1606 TCACTTGGTTCTTCGTCTTCGTGGTGGT 1633
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| ||||| || |||| || ||||| || | | ||||| | ||| || |||||
Sbjct 2004 ACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAAGCC 2063
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| |||||||| ||||| ||||| || ||||| || | || ||||| || |||
Sbjct 2064 AAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGTAAA 2123
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| || || || || || | ||||||||||||||||||| || || || | ||
Sbjct 2124 CAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCAC 2183
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| || |||||||| || ||||||
Sbjct 2184 TTGGTCTTGCGATTACGTGGAGGT 2207
Score = 100 bits (110), Expect = 2e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||||||||| | || || || || ||| | |||| || | ||| | ||||
Sbjct 1716 ACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAGGCC 1775
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
||||| || |||||||| || ||||| || |||||||||||||| || ||||| || |||
Sbjct 1776 AAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAAA 1835
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| | || ||| ||||| || | |||||||| || || || ||||| ||
Sbjct 1836 CAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAAC 1888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419616693249835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |