Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq19309 129 5e-25 >seq19309 Length=20099 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || ||||| || ||||||||||||||| Sbjct 1343 ATACCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCG 1284 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||||||||||||| || || |||||||||| |||||||| || Sbjct 1283 GCCAGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGT 1224 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| || | | |||| ||| |||| ||||| Sbjct 1223 GGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCA 1164 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 || || | ||| | || |||||||| || Sbjct 1163 ACCTCGAGGGTGATGGTCTTGCCGGTGAG 1135 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 114139 ATTAC-CATTTACAAAT-ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTT 114196 ||||| || ||||| | ||| ||||||| || ||| || || || | ||||| || || Sbjct 2225 ATTACACAATTACATTTGACCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTT 2166 Query 114197 TTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAG 114256 |||||||||||||||| | || || ||||| | ||||||||| || |||| | Sbjct 2165 TTGAATGTTGTAATCGGCAAGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAA 2106 Query 114257 ACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAAC 114316 ||||||||||| || || || ||||| ||||| |||||| ||| | | |||| Sbjct 2105 TCGCTGTTGGTCTGGTGGGATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAAT 2046 Query 114317 GGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362 || || | || ||||| || | ||| | || || || |||||| Sbjct 2045 TGTATCCGATGACTCGACTTCGAGGGTGATGGTCTTACCAGTCAGA 2000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || ||||| ||||||||||| || Sbjct 1635 ATACCACCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCA 1576 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| ||||||||||| || || || |||| ||||| ||||| || ||| Sbjct 1575 GCGAGAGTTCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGA 1516 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | |||| ||||||| ||||||| Sbjct 1515 GGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCG 1456 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || || | || | || || || |||| Sbjct 1455 ACTTCGAGAGTGATGGTCTTTCCAGTCA 1428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || ||||| || || || |||||||| Sbjct 1921 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCA 1862 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||| |||||||||||||| | || ||||| ||||| || || Sbjct 1861 GCGAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGG 1802 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| || || || | | || | ||||||| |||||| Sbjct 1801 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCG 1742 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362 || |||| || | ||||| ||||| ||| Sbjct 1741 ACCTCCAGCGTAATTGTTTTACCGGTAAGA 1712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420022985477508