Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 129 5e-25
>seq19309
Length=20099
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || ||||| | || ||||| || |||||||||||||||
Sbjct 1343 ATACCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCG 1284
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||||||||||||||| || || |||||||||| |||||||| ||
Sbjct 1283 GCCAGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGT 1224
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||||||||| |||||| || | | |||| ||| |||| |||||
Sbjct 1223 GGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCA 1164
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAG 114361
|| || | ||| | || |||||||| ||
Sbjct 1163 ACCTCGAGGGTGATGGTCTTGCCGGTGAG 1135
Score = 104 bits (114), Expect = 2e-17
Identities = 160/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 114139 ATTAC-CATTTACAAAT-ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTT 114196
||||| || ||||| | ||| ||||||| || ||| || || || | ||||| || ||
Sbjct 2225 ATTACACAATTACATTTGACCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTT 2166
Query 114197 TTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAG 114256
|||||||||||||||| | || || ||||| | ||||||||| || |||| |
Sbjct 2165 TTGAATGTTGTAATCGGCAAGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAA 2106
Query 114257 ACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAAC 114316
||||||||||| || || || ||||| ||||| |||||| ||| | | ||||
Sbjct 2105 TCGCTGTTGGTCTGGTGGGATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAAT 2046
Query 114317 GGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362
|| || | || ||||| || | ||| | || || || ||||||
Sbjct 2045 TGTATCCGATGACTCGACTTCGAGGGTGATGGTCTTACCAGTCAGA 2000
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| || || | || || ||||| ||||||||||| ||
Sbjct 1635 ATACCACCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCA 1576
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| ||| ||||||||||| || || || |||| ||||| ||||| || |||
Sbjct 1575 GCGAGAGTTCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGA 1516
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| |||||| || | | |||| ||||||| |||||||
Sbjct 1515 GGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCG 1456
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360
|| || | || | || || || ||||
Sbjct 1455 ACTTCGAGAGTGATGGTCTTTCCAGTCA 1428
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | || | ||| | || ||||| || || || ||||||||
Sbjct 1921 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCA 1862
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || ||| |||||| |||||||||||||| | || ||||| ||||| || ||
Sbjct 1861 GCGAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGG 1802
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| || || || | | || | ||||||| ||||||
Sbjct 1801 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCG 1742
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362
|| |||| || | ||||| ||||| |||
Sbjct 1741 ACCTCCAGCGTAATTGTTTTACCGGTAAGA 1712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420022985477508
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |