Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq19309 105 7e-18 seq21128 84.2 2e-11 >seq19309 Length=20099 Score = 105 bits (116), Expect = 7e-18 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || || ||||| || || || | | |||||||||||||||||||| ||| Sbjct 2206 CCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 2147 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || | ||||||||| | | |||||| ||||||||||| || || Sbjct 2146 AGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGG 2087 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | ||| |||| || | || || | ||||| | Sbjct 2086 ATACCTTCCTTGTC-CTGAATCTTGGCTTTGACATTG-TCAATTGTATCCGATGACTCGA 2029 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGA 138594 | |||| || | || |||||||||||| Sbjct 2028 CTTCGAGGGTGATGGTCTTACCAGTCAGA 2000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | || ||||| ||||||||||| ||| | Sbjct 1340 CCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCC 1281 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| |||| | |||| ||||| |||||||| || || Sbjct 1280 AGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGA 1221 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| | || | || |||| || | ||| |||| || || | Sbjct 1220 ATACCTTCTTTGTC-TTGAATCTTGGCCTTGACATTG-TCAATGGTATCGGAAGATTCAA 1163 Query 138566 CCTCGA 138571 |||||| Sbjct 1162 CCTCGA 1157 >seq21128 Length=23319 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 154373 GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432 ||| ||| |||||| |||| ||||| || ||||| |||| ||| || |||||||| Sbjct 16504 GTAAGTTCTGATGGCTCGCTCGACATCATTCCCATGAATTCCGACCGCAACACGCATGAG 16563 Query 154433 CATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAG 154492 |||||| || || ||||| ||||||| ||||| || |||||| || || || Sbjct 16564 CATGTGTTGTGGCCGTTCAGCGACTCGATTGTTGATACGCAAGAGGTAGGATCGCTCAAG 16623 Query 154493 GGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCAT 154533 || ||| |||| || || ||||| | ||| || | |||| Sbjct 16624 CGTCTTGAAACCAAAGTAGTTGTAGTTAAAGTCACGGTCAT 16664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496127422830480