Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 120 2e-22
>seq19309
Length=20099
Score = 120 bits (132), Expect = 2e-22
Identities = 153/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| || || |||| || || || ||||| ||||| || ||||| ||||||||||||
Sbjct 2206 CCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 2147
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| ||| | ||||||| |||||||| || || | || || ||||||||||| |||
Sbjct 2146 AGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGG 2087
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128
|| ||||||||||| ||| ||| ||| ||| | || || ||||| | || || ||
Sbjct 2086 ATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTATC-CGATGACTCGAC 2028
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| | ||| ||||| ||||| ||||||
Sbjct 2027 TTCGAGGGTGATGGTCTTACCAGTCAGA 2000
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || |||||||| || || || || || ||||||||||||
Sbjct 1340 CCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCC 1281
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | |||||| || || | || | ||| |||||||| ||||
Sbjct 1280 AGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGA 1221
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| ||| ||| || ||| | || || |||||| | ||| ||
Sbjct 1220 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACC 1161
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAG 15155
|| | ||| ||||| || || || ||
Sbjct 1160 TCGAGGGTGATGGTCTTGCCGGTGAG 1135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357297223997315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |