Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq19309 102 8e-17 >seq19309 Length=20099 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || ||||||||||| ||||| || | |||||||| |||||||| ||||||||| | Sbjct 2206 CCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 2147 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||||| || || |||| |||||||| || || || || Sbjct 2146 AGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGG 2087 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| | | || |||| | || | || |||| |||||| Sbjct 2086 ATACCTTCCTTGTCC-TGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGAC 2028 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGA 127093 ||||| ||| | || || || |||||| Sbjct 2027 TTCGAGGGTGATGGTCTTACCAGTCAGA 2000 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | ||| | ||| | || || || || || ||||||||||| | Sbjct 1919 TCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGC 1860 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| || || ||||| ||||| | |||| || || ||||| || || Sbjct 1859 GAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGG 1800 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| |||||| ||||| |||| |||| ||||| | |||| Sbjct 1799 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTG-TCGATCGTGTCGGATGATTCGA 1741 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 | || | || | ||||| ||||| ||| Sbjct 1740 CCTCCAGCGTAATTGTTTTACCGGTAAGA 1712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475371469726160