Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 102 8e-17
>seq19309
Length=20099
Score = 102 bits (112), Expect = 8e-17
Identities = 149/208 (72%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || ||||||||||| ||||| || | |||||||| |||||||| ||||||||| |
Sbjct 2206 CCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 2147
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | ||||| || || |||| |||||||| || || || ||
Sbjct 2146 AGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGG 2087
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || ||||||||| ||| | | || |||| | || | || |||| ||||||
Sbjct 2086 ATACCTTCCTTGTCC-TGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGAC 2028
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGA 127093
||||| ||| | || || || ||||||
Sbjct 2027 TTCGAGGGTGATGGTCTTACCAGTCAGA 2000
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/209 (71%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| |||| || | ||| | ||| | || || || || || ||||||||||| |
Sbjct 1919 TCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGC 1860
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| |||||| ||| || || ||||| ||||| | |||| || || ||||| || ||
Sbjct 1859 GAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGG 1800
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||| ||||||||| |||||| ||||| |||| |||| ||||| | ||||
Sbjct 1799 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTG-TCGATCGTGTCGGATGATTCGA 1741
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGA 127093
| || | || | ||||| ||||| |||
Sbjct 1740 CCTCCAGCGTAATTGTTTTACCGGTAAGA 1712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475371469726160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |