Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq21128 111 2e-19
seq9033 105 8e-18
>seq21128
Length=23319
Score = 111 bits (122), Expect = 2e-19
Identities = 412/636 (65%), Gaps = 26/636 (4%)
Strand=Plus/Plus
Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974
||||| |||||||| || |||||| ||||| |||||| || || || || |||||
Sbjct 14954 GTGTAAGGCTCAAAACATTCATTGAAACCCATGATTTGACTGGTCGAAGCAGTAGGCATC 15013
Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034
|| || | | ||| ||| | || || || |||| ||| || || |||||
Sbjct 15014 GGCGCAAGCAAAAGTGAGTTTCTCAGGCCGGTAGCCTTAATCTTTTCTTTCAGATCGTCC 15073
Query 116035 CA-GTCGT-AGTT--GAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090
|| ||| || | ||| | || | ||| |||||||| |||| || |||||
Sbjct 15074 CATGTCCACAGGTCGGAGGGT-GTGACGCCC---CACATATCGTACTGTAGTTCTCCTTG 15129
Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GA 116147
|| ||||| || ||| || ||||||| ||| || ||| | || | ||| ||
Sbjct 15130 ACTAGCGGGCGAACCGGGAAACGTTTCATATGCGCCTTCCACCACGGCAAGCTCGTTTGA 15189
Query 116148 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGC 116207
| || || || |||||||| || | ||||||||| || | || |||| | ||| ||
Sbjct 15190 G---GCTTCAAGTGCTGCGTGGTAAAGTGTCTCAAAGATCTGGGCGTTCAATTTCTTAGC 15246
Query 116208 CTCGTCGGAATCAAACGCGAGACGGCACAAAATA---AATACATCCGCGAGACCTTGGAC 116264
|| || || || | || | ||| || ||| |||| || | || | ||
Sbjct 15247 TTCCGGTGAGTCGAATG---GAAGCTTCAAGATTTGGAATGCATCTGCCAATCCATTTAC 15303
Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324
|| | ||||| || ||||||||||| || |||||| ||| | ||||| || |
Sbjct 15304 TCCAATTCCAATGGGACGATGTCTCATGTTGGACTTTTTAGCTTCCGGAACGGGGTAGTA 15363
Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384
||| ||| || | | ||| | || ||||| |||| || | ||| || |||||
Sbjct 15364 GTTCACATCAATTATACGATTCAAGTTCCACGTGACTTCCTTCGTTACTTCGTGTAGCTT 15423
Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444
|| | ||||| | || || | || ||| |||| | || || || || || |||||
Sbjct 15424 TTGGAAATCATA-----GACTC-CATCGGTGATATACGTCGGCAGCGCTATCGAGGCCAG 15477
Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504
||||| || | ||| || | | |||||| || || || ||||||| || ||
Sbjct 15478 GTTACAAACCGCCACCTCGTCTGGGGCTGAGTACTCGATGATCTCAGTACACAGGTTCGA 15537
Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540
||| ||||| || | |||||||||||| || ||
Sbjct 15538 TGACTTGATGGTACCAAGGTTCTTTTGATTCGATTT 15573
>seq9033
Length=2832
Score = 105 bits (116), Expect = 8e-18
Identities = 316/484 (65%), Gaps = 18/484 (4%)
Strand=Plus/Minus
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
|||||||||| | || || ||||| || ||||| || ||| || ||||| |
Sbjct 2506 CCCACATATCGTATTGTAGTTCTCCTTGACTAGCGGGCGAACCAGGAAACGTTTCATACG 2447
Query 116123 GGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179
||| ||| || | || | ||| ||| || || || |||||||| || | |||||
Sbjct 2446 CGCCTTCAGCCACGGCAAGCTCGTTTGAG---GCTTCAAGCGCTGCGTGGTAAAGTGTCT 2390
Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAA 116239
| || || | ||||||| | |||||| || || || || | || | ||| |
Sbjct 2389 CGAAGATCTGGGCATTCAATTTCTTGGCTTCCGGTGAGTCGAATG---GAAGCTTCAAGA 2333
Query 116240 T---AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 116296
| |||| |||| || | || || |||| ||||| || ||||||||||| || |
Sbjct 2332 TGTGAAATGCATCTGCCAATCCGGATACTCCGATTCCAATGGGACGATGTCTCATGTTGG 2273
Query 116297 ACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356
||||| ||| | ||||| || ||||| ||| || | | ||| | || |
Sbjct 2272 ACTTTTTAGCTTCCGGAACGGGGTAGTAATTCACATCAATTATACGATTCAAGTTCCACG 2213
Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416
| || |||| || | ||| || ||||||| | || || | || || | || |||
Sbjct 2212 TAACTTCCTTCGTCACTTCGTGCAGCTTTTGGAAAGCATA-----GACTC-CATCGGTGA 2159
Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476
|||| | || || ||||| || ||||| |||| || | |||||| | | |
Sbjct 2158 TATACGTCGGCAGCGCGATCGAGGCCAGGCTACAGACCGCCACCTCATCTGGGGCTGAAT 2099
Query 116477 ACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTG 116536
|||| || || || ||||||| || || ||| |||||||| | |||||||||||| |
Sbjct 2098 ACTCCATGATCTCAGTACACAGGTTCGATGACTTGATGGTGCCAAGGTTCTTTTGATTCG 2039
Query 116537 ACTT 116540
| ||
Sbjct 2038 ATTT 2035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613340333710440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |