Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq21128 111 2e-19 seq9033 105 8e-18 >seq21128 Length=23319 Score = 111 bits (122), Expect = 2e-19 Identities = 412/636 (65%), Gaps = 26/636 (4%) Strand=Plus/Plus Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| |||||||| || |||||| ||||| |||||| || || || || ||||| Sbjct 14954 GTGTAAGGCTCAAAACATTCATTGAAACCCATGATTTGACTGGTCGAAGCAGTAGGCATC 15013 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | | ||| ||| | || || || |||| ||| || || ||||| Sbjct 15014 GGCGCAAGCAAAAGTGAGTTTCTCAGGCCGGTAGCCTTAATCTTTTCTTTCAGATCGTCC 15073 Query 116035 CA-GTCGT-AGTT--GAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090 || ||| || | ||| | || | ||| |||||||| |||| || ||||| Sbjct 15074 CATGTCCACAGGTCGGAGGGT-GTGACGCCC---CACATATCGTACTGTAGTTCTCCTTG 15129 Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GA 116147 || ||||| || ||| || ||||||| ||| || ||| | || | ||| || Sbjct 15130 ACTAGCGGGCGAACCGGGAAACGTTTCATATGCGCCTTCCACCACGGCAAGCTCGTTTGA 15189 Query 116148 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGC 116207 | || || || |||||||| || | ||||||||| || | || |||| | ||| || Sbjct 15190 G---GCTTCAAGTGCTGCGTGGTAAAGTGTCTCAAAGATCTGGGCGTTCAATTTCTTAGC 15246 Query 116208 CTCGTCGGAATCAAACGCGAGACGGCACAAAATA---AATACATCCGCGAGACCTTGGAC 116264 || || || || | || | ||| || ||| |||| || | || | || Sbjct 15247 TTCCGGTGAGTCGAATG---GAAGCTTCAAGATTTGGAATGCATCTGCCAATCCATTTAC 15303 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324 || | ||||| || ||||||||||| || |||||| ||| | ||||| || | Sbjct 15304 TCCAATTCCAATGGGACGATGTCTCATGTTGGACTTTTTAGCTTCCGGAACGGGGTAGTA 15363 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384 ||| ||| || | | ||| | || ||||| |||| || | ||| || ||||| Sbjct 15364 GTTCACATCAATTATACGATTCAAGTTCCACGTGACTTCCTTCGTTACTTCGTGTAGCTT 15423 Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 || | ||||| | || || | || ||| |||| | || || || || || ||||| Sbjct 15424 TTGGAAATCATA-----GACTC-CATCGGTGATATACGTCGGCAGCGCTATCGAGGCCAG 15477 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 ||||| || | ||| || | | |||||| || || || ||||||| || || Sbjct 15478 GTTACAAACCGCCACCTCGTCTGGGGCTGAGTACTCGATGATCTCAGTACACAGGTTCGA 15537 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 ||| ||||| || | |||||||||||| || || Sbjct 15538 TGACTTGATGGTACCAAGGTTCTTTTGATTCGATTT 15573 >seq9033 Length=2832 Score = 105 bits (116), Expect = 8e-18 Identities = 316/484 (65%), Gaps = 18/484 (4%) Strand=Plus/Minus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 |||||||||| | || || ||||| || ||||| || ||| || ||||| | Sbjct 2506 CCCACATATCGTATTGTAGTTCTCCTTGACTAGCGGGCGAACCAGGAAACGTTTCATACG 2447 Query 116123 GGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179 ||| ||| || | || | ||| ||| || || || |||||||| || | ||||| Sbjct 2446 CGCCTTCAGCCACGGCAAGCTCGTTTGAG---GCTTCAAGCGCTGCGTGGTAAAGTGTCT 2390 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAA 116239 | || || | ||||||| | |||||| || || || || | || | ||| | Sbjct 2389 CGAAGATCTGGGCATTCAATTTCTTGGCTTCCGGTGAGTCGAATG---GAAGCTTCAAGA 2333 Query 116240 T---AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 116296 | |||| |||| || | || || |||| ||||| || ||||||||||| || | Sbjct 2332 TGTGAAATGCATCTGCCAATCCGGATACTCCGATTCCAATGGGACGATGTCTCATGTTGG 2273 Query 116297 ACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 ||||| ||| | ||||| || ||||| ||| || | | ||| | || | Sbjct 2272 ACTTTTTAGCTTCCGGAACGGGGTAGTAATTCACATCAATTATACGATTCAAGTTCCACG 2213 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416 | || |||| || | ||| || ||||||| | || || | || || | || ||| Sbjct 2212 TAACTTCCTTCGTCACTTCGTGCAGCTTTTGGAAAGCATA-----GACTC-CATCGGTGA 2159 Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476 |||| | || || ||||| || ||||| |||| || | |||||| | | | Sbjct 2158 TATACGTCGGCAGCGCGATCGAGGCCAGGCTACAGACCGCCACCTCATCTGGGGCTGAAT 2099 Query 116477 ACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTG 116536 |||| || || || ||||||| || || ||| |||||||| | |||||||||||| | Sbjct 2098 ACTCCATGATCTCAGTACACAGGTTCGATGACTTGATGGTGCCAAGGTTCTTTTGATTCG 2039 Query 116537 ACTT 116540 | || Sbjct 2038 ATTT 2035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613340333710440