Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 104 6e-17
seq12868 102 2e-16
>seq19309
Length=20099
Score = 104 bits (114), Expect = 6e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| ||||| || ||||| || | |||||| || |||| || | ||||||||| || ||
Sbjct 1316 TGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCAAGTTGT 1257
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|||||||| ||||||||||| || ||||| || ||| |||||| || ||||||||
Sbjct 1256 TTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGAATCTTG 1197
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| || || | ||| || | | ||| || || | ||||| ||||| || |||
Sbjct 1196 GCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGTG 1137
Query 199607 AG 199608
||
Sbjct 1136 AG 1135
Score = 95.1 bits (104), Expect = 3e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| ||||| || ||||| || ||||| |||| ||||| ||||| | || | ||||||
Sbjct 1903 AGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGACCATCT 1844
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||| || || || || || || ||||| || || || || ||| ||||| |||
Sbjct 1843 TCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCC 1784
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || || ||| ||| |||| ||||| | || ||| || |||| ||| || ||
Sbjct 1783 TGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGACCTCCAGCGTAATTGTT 1724
Query 199598 TTACCCGTGAGA 199609
||||| || |||
Sbjct 1723 TTACCGGTAAGA 1712
>seq12868
Length=7141
Score = 102 bits (112), Expect = 2e-16
Identities = 74/86 (86%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | |||||||| || || || ||||||||||||| ||||||||||||||||||
Sbjct 5945 CGAAGACGAAGGACAAGATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTG 5886
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGC 199494
| |||||||| ||||||||||||||
Sbjct 5885 CGACCATCTTCGAGCTGCTTTCCGGC 5860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178592931762853
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |