Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq19309 104 6e-17 seq12868 102 2e-16 >seq19309 Length=20099 Score = 104 bits (114), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || ||||| || | |||||| || |||| || | ||||||||| || || Sbjct 1316 TGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCAAGTTGT 1257 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||| ||||||||||| || ||||| || ||| |||||| || |||||||| Sbjct 1256 TTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGAATCTTG 1197 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || || | ||| || | | ||| || || | ||||| ||||| || ||| Sbjct 1196 GCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGTG 1137 Query 199607 AG 199608 || Sbjct 1136 AG 1135 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| || ||||| |||| ||||| ||||| | || | |||||| Sbjct 1903 AGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGACCATCT 1844 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| || || || || || || ||||| || || || || ||| ||||| ||| Sbjct 1843 TCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCC 1784 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| |||| ||||| | || ||| || |||| ||| || || Sbjct 1783 TGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGACCTCCAGCGTAATTGTT 1724 Query 199598 TTACCCGTGAGA 199609 ||||| || ||| Sbjct 1723 TTACCGGTAAGA 1712 >seq12868 Length=7141 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||| || || || ||||||||||||| |||||||||||||||||| Sbjct 5945 CGAAGACGAAGGACAAGATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTG 5886 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGC 199494 | |||||||| |||||||||||||| Sbjct 5885 CGACCATCTTCGAGCTGCTTTCCGGC 5860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178592931762853