Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq19309 116 1e-20 seq18860 96.9 1e-14 >seq19309 Length=20099 Score = 116 bits (128), Expect = 1e-20 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || || || || || || |||||||| || |||| |||||| | | || Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || |||||||| || ||||| ||||| || || ||||||||| | || || | || Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||||||||||||||| | || |||| ||||| || ||| | ||||| | || ||| Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314 Query 391251 CACTTAGTA 391259 || || ||| Sbjct 1315 CATTTGGTA 1323 Score = 113 bits (124), Expect = 2e-19 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 ||||||| || || || ||||| || || ||||| || || | ||||| | | || Sbjct 1428 TGACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGG 1487 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || |||||||| ||||| || || |||||||||||||||||| | || || |||| | Sbjct 1488 CCAAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAA 1547 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 | ||||||||||| || ||||| | || || || || ||| | || || | || |||| Sbjct 1548 AGCAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTC 1607 Query 391252 ACTTAGT 391258 |||| || Sbjct 1608 ACTTGGT 1614 Score = 111 bits (122), Expect = 6e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 ||||||||||| || || || || || || || ||||| |||| ||||| | | ||| Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || ||||| || |||||||| || || || || ||||| || ||||| || |||| Sbjct 2061 GCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGT 2120 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||| | ||||| || |||| | || ||||| || ||| | ||||| | || ||| Sbjct 2121 AAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTT 2180 Query 391251 CACTTAGTATT 391261 ||||| || || Sbjct 2181 CACTTGGTCTT 2191 Score = 107 bits (118), Expect = 8e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || |||||||| ||||| || || || |||||||| || | || || | || Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAG 1772 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 ||||| || || |||||||| ||||| || |||||||||||| | ||||| | || Sbjct 1773 GCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGT 1832 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||||| |||||||| | || | || ||||| ||||| | ||||| |||| ||| Sbjct 1833 AAACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTT 1892 Query 391251 CA 391252 || Sbjct 1893 CA 1894 >seq18860 Length=11993 Score = 96.9 bits (106), Expect = 1e-14 Identities = 293/442 (66%), Gaps = 13/442 (3%) Strand=Plus/Minus Query 364566 ATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGA-GCAAA 364624 || ||||| | ||||| || |||||||| |||| ||||| |||| | || || Sbjct 9814 ATACCATCGATGGTTGACGGCTTTAAACCCGGTCAACGAAAAGTTTTATTTGCTTGC--- 9758 Query 364625 TTTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTT-TGTATCTG 364683 || ||||||| | |||| | | ||||||||||| || | ||||| ||| | | Sbjct 9757 TTCAAGAGGAA-ATTGAAAGCGGAGATTAAAGTAGCTCAGTTGGGAGGTTACTGTGCC-G 9700 Query 364684 ACCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAATGGCAC 364743 | | ||||||||||||||| || ||| | | | | | || | | | || | Sbjct 9699 AACATTCAGCTTATCATCACGGAGAACAGAGTCTTACGCAAACGATTGTCGCCCTTGCTC 9640 Query 364744 AAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGTC 364803 |||| ||||| ||||| |||||| | ||| |||| ||| || || ||||| || | Sbjct 9639 AAAACTTTGTCGGAAGCAATAATATCAATGTACTTTCACCTAATGGGCAATTCGGTACAA 9580 Query 364804 GAGTAATGGGAGGTAAAGATTCTGCCAGCCCACGTTATATTTGGACCAAACTTGAAAA-A 364862 ||| | || ||||||||| | ||| || | ||||||| ||||| ||||||| | Sbjct 9579 GAGCGAATGGTGGTAAAGATGCAGCCTCTGCAAGGTATATTTTTACCAATATTGAAAAGA 9520 Query 364863 GTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAATGATGAT 364922 | |||| | || || | ||||| ||| | |||||||| | | ||| ||| Sbjct 9519 TTACCAGG-GTGATCTTCCCACCTCAAGATGATCATGTCTTAAATTACTTAACTGACGAT 9461 Query 364923 GGA--TTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAATG 364980 ||| | || | ||||| |||| ||| | ||| | | || ||| | ||||| |||| Sbjct 9460 GGAGCTCAA--ATCGAACCGGAATGGTATGTACCTGTCTTACCGATGGTCTTAGTTAATG 9403 Query 364981 GAGCAACAGGCATTGGTACTGG 365002 || ||| || ||||| || || Sbjct 9402 GATCAAGTGGAATTGGAACCGG 9381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975167595023972