Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq18202 104 2e-16 seq18860 95.1 9e-14 >seq18202 Length=17611 Score = 104 bits (114), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 |||||| | || || || || |||| || ||| ||| || ||||| |||||| || Sbjct 15183 ACCAATGAGACGCTTGGCGTCGAAAACGGTGTTGTGTGGGTTCATTGCCACTTGATTCTT 15124 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| || || || |||| |||| | || || || | || || || || || || || Sbjct 15123 GGCGGCGTCACCGATCAATCGTTCAGAGTCAGTGAAAGCGACGTAAGAAGGGGTGGTTCG 15064 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || |||||||| || ||||| |||||||| | |||| ||||||||||| |||||| Sbjct 15063 GTTTCCTTGATCGTTGGCAATGATTTCAACACGATCATTCTGCCATACACCGACACAAGA 15004 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | || ||||| | ||| ||||| | ||| Sbjct 15003 GTAGGTAGTTCCGAGATCGATACCGACAGC 14974 Score = 104 bits (114), Expect = 2e-16 Identities = 195/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| || || ||||||||||| ||||| | ||| | || | || ||| | || Sbjct 15820 ACGAGACGGTTGTCGAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCTTTGACC 15761 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | || || |||| || ||| |||| |||||| || ||||| || | ||| Sbjct 15760 TCAAAGATACCCTCCTCAATAGTCAAGAGAGAGACATCAAAAGTACCACCTCCAAGATCG 15701 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || ||||| || | || || |||||||| || || | || ||| Sbjct 15700 AAGATGAGCACATTGCGCTCACCAACGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCA 15641 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || ||||| || ||||| | | || || ||||||| || || ||||| || Sbjct 15640 GCGGTAGGTTCGTTGATAATACGAAGAATGTTGAGACCAGAGATCAAACCAGCATCCTTG 15581 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 518301 |||||||||| || || || || || |||||||| || || | ||| Sbjct 15580 GTGGCTTGTCGCTGAGAGTCATTGAAGTATGCAGGGACGGTGACAAC 15534 >seq18860 Length=11993 Score = 95.1 bits (104), Expect = 9e-14 Identities = 195/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 635406 ATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAG 635465 |||| | || ||||| ||||| ||| | | ||||| || || || || || |||| Sbjct 10792 ATGCCAATAACGCAGGGACCAAGAAAGCAGCAGATTGTACTCTCATCTTAACGGAAGGAG 10733 Query 635466 ATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGATTATTATGGAG 635525 ||||||| ||| | || ||| | |||| | || || ||| | ||| ||||||| | Sbjct 10732 ATTCAGCCAAATCCTTGGCTGTTGCTGGATTATCGGTCATCGGACGTGATAATTATGGTG 10673 Query 635526 TTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTGCT- 635584 ||||||||||| | |||||||| | || ||| | || || ||| || ||||| | Sbjct 10672 TTTTCCCACTTCGTGGAAAACTACTAAACGTTCGAGAAGCCAGT-GGAAGTCAATTGTTA 10614 Query 635585 GATAATGAGGAAATTACAGCA-ATCaaaaaaaTTGTTGGACTTGAACAAGGAAAAGTTTA 635643 | |||| || | | || || ||||| |||||| | |||||| ||||||| ||| || Sbjct 10613 GCGAATGCTGAGA-TCCAACACATCAAGAAAATTATGGGACTTCAACAAGGCAAAAAATA 10555 Query 635644 TGATGATCTCAAAGGT--TTACGATATGGTAGTATTATGAT 635682 | | | || | || ||||||||||| ||| | ||||| Sbjct 10554 T-ACCA-GTCGAGAGTCCTTACGATATGGAAGTTTGATGAT 10516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779742646745854