Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq18202 104 2e-16
seq18860 95.1 9e-14
>seq18202
Length=17611
Score = 104 bits (114), Expect = 2e-16
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562
|||||| | || || || || |||| || ||| ||| || ||||| |||||| ||
Sbjct 15183 ACCAATGAGACGCTTGGCGTCGAAAACGGTGTTGTGTGGGTTCATTGCCACTTGATTCTT 15124
Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622
||| || || || |||| |||| | || || || | || || || || || || ||
Sbjct 15123 GGCGGCGTCACCGATCAATCGTTCAGAGTCAGTGAAAGCGACGTAAGAAGGGGTGGTTCG 15064
Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682
|| |||||||| || ||||| |||||||| | |||| ||||||||||| ||||||
Sbjct 15063 GTTTCCTTGATCGTTGGCAATGATTTCAACACGATCATTCTGCCATACACCGACACAAGA 15004
Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGC 518712
| || ||||| | ||| ||||| | |||
Sbjct 15003 GTAGGTAGTTCCGAGATCGATACCGACAGC 14974
Score = 104 bits (114), Expect = 2e-16
Identities = 195/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
|| ||||| || || ||||||||||| ||||| | ||| | || | || ||| | ||
Sbjct 15820 ACGAGACGGTTGTCGAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCTTTGACC 15761
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| || | || || |||| || ||| |||| |||||| || ||||| || | |||
Sbjct 15760 TCAAAGATACCCTCCTCAATAGTCAAGAGAGAGACATCAAAAGTACCACCTCCAAGATCG 15701
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| || || ||||| || | || || |||||||| || || | || |||
Sbjct 15700 AAGATGAGCACATTGCGCTCACCAACGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCA 15641
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|| || ||||| || ||||| | | || || ||||||| || || ||||| ||
Sbjct 15640 GCGGTAGGTTCGTTGATAATACGAAGAATGTTGAGACCAGAGATCAAACCAGCATCCTTG 15581
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 518301
|||||||||| || || || || || |||||||| || || | |||
Sbjct 15580 GTGGCTTGTCGCTGAGAGTCATTGAAGTATGCAGGGACGGTGACAAC 15534
>seq18860
Length=11993
Score = 95.1 bits (104), Expect = 9e-14
Identities = 195/281 (69%), Gaps = 8/281 (3%)
Strand=Plus/Minus
Query 635406 ATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAG 635465
|||| | || ||||| ||||| ||| | | ||||| || || || || || ||||
Sbjct 10792 ATGCCAATAACGCAGGGACCAAGAAAGCAGCAGATTGTACTCTCATCTTAACGGAAGGAG 10733
Query 635466 ATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGATTATTATGGAG 635525
||||||| ||| | || ||| | |||| | || || ||| | ||| ||||||| |
Sbjct 10732 ATTCAGCCAAATCCTTGGCTGTTGCTGGATTATCGGTCATCGGACGTGATAATTATGGTG 10673
Query 635526 TTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTGCT- 635584
||||||||||| | |||||||| | || ||| | || || ||| || ||||| |
Sbjct 10672 TTTTCCCACTTCGTGGAAAACTACTAAACGTTCGAGAAGCCAGT-GGAAGTCAATTGTTA 10614
Query 635585 GATAATGAGGAAATTACAGCA-ATCaaaaaaaTTGTTGGACTTGAACAAGGAAAAGTTTA 635643
| |||| || | | || || ||||| |||||| | |||||| ||||||| ||| ||
Sbjct 10613 GCGAATGCTGAGA-TCCAACACATCAAGAAAATTATGGGACTTCAACAAGGCAAAAAATA 10555
Query 635644 TGATGATCTCAAAGGT--TTACGATATGGTAGTATTATGAT 635682
| | | || | || ||||||||||| ||| | |||||
Sbjct 10554 T-ACCA-GTCGAGAGTCCTTACGATATGGAAGTTTGATGAT 10516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779742646745854
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |