Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq18202 176 6e-39 seq19754 118 1e-21 seq20025 109 7e-19 seq18860 100 4e-16 >seq18202 Length=17611 Score = 176 bits (194), Expect = 6e-39 Identities = 204/275 (74%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || || || |||||||| ||||||||||| Sbjct 15808 TCGAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCTTTGACCTCAAAGATACCC 15749 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || |||||||| |||||||| || || || || ||||| || Sbjct 15748 TCCTCAATAGTCAAGAGAGAGACATCAAAAGTACCACCTCCAAGATCGAAGATGAGCACA 15689 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | | | ||||| || |||||||| ||||| || || || || ||||| Sbjct 15688 TTGCGCTCACCAACGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCAGCGGTAGGTTCG 15629 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || |||||||||||| ||| || |||| || | ||||| || || |||||||| Sbjct 15628 TTGATAATACGAAGAATGTTGAGACCAGAGATCAAACCAGCATCCTTGGTGGCTTGTCGC 15569 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || || || ||||| || ||||| || || || Sbjct 15568 TGAGAGTCATTGAAGTATGCAGGGACGGTGACAAC 15534 Score = 145 bits (160), Expect = 1e-29 Identities = 180/246 (73%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 7899 TCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAA 7958 ||||||||||||| || | || | || || | || || |||||||| || || | Sbjct 15220 TCATATCGTCTTGAACATCCGCATCGGCGAATTTGCGACCAATGAGACGCTTGGCGTCGA 15161 Query 7959 AAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTT 8018 |||| ||||| | |||||||| || ||| ||||| || ||||| ||||| | |||| Sbjct 15160 AAACGGTGTTGTGTGGGTTCATTGCCACTTGATTCTTGGCGGCGTCACCGATCAATCGTT 15101 Query 8019 CATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAA 8078 | | || || || |||||||| || ||||| ||||| || ||||| ||||| |||| Sbjct 15100 C---AGAGTCAGTGAAAGCGACGTAAGAAGGGGTGGTTCGGTTTCCTTGATCGTTGGCAA 15044 Query 8079 TAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAA 8138 | ||||| || || || || ||||| || ||||| || || || || ||||| | ||| | Sbjct 15043 TGATTTCAACACGATCATTCTGCCATACACCGACACAAGAGTAGGTAGTTCCGAGATCGA 14984 Query 8139 TACCGA 8144 |||||| Sbjct 14983 TACCGA 14978 Score = 131 bits (144), Expect = 2e-25 Identities = 192/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 ||||| || || || ||||| ||||| || || |||| || || | || || ||||| Sbjct 16200 GGGATACGGGTGGAACCACCAACCAATACAATCTCATGAACATTGGCCTTGTCAATCTTG 16141 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 || |||| | ||| |||||||| |||||| || | ||||||||| || ||| Sbjct 16140 GAATCTCTCAACACTTTCTCGACAGGCTCCATAGTCTTTCTGAACAAGTCTTGGCAGAGT 16081 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || || ||||||| || || ||||| || || || ||| | | |||||| Sbjct 16080 TCCTCGAATCGGGCCCGGGTAAGAGACGTGTAGAAGTCGACACCCTCGAAAAGGGAATCA 16021 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 ||||| || | ||||| || | || || | |||||||| || || || || || ||| Sbjct 16020 ATTTCGATAGAGGTTTGAGCAGCGGATGAGAGAGTTCGCTTGGCACGTTCGCAAGCAGTT 15961 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || | || || | ||||| | |||||||| Sbjct 15960 CGAAGTCGTCGTACAGCACGGGCATTACCGGA 15929 Score = 107 bits (118), Expect = 2e-18 Identities = 307/464 (66%), Gaps = 10/464 (2%) Strand=Plus/Minus Query 6636 CCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTA 6695 |||| ||||| || || || || ||||||||| | || ||| || |||| | Sbjct 16758 CCTTGTCATTGGTGATGGTGATTCGGCTGGATTTACCAGTGGTCTTGTCGGAAGCAGAAA 16699 Query 6696 CATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCG 6755 | || | ||||| || ||||| |||||||| | || | ||||| || ||| | | Sbjct 16698 CGTTGAGGATACCGTTGGCATCCACATCGAAGGTGACTTCGATTTGAGGAACACCACGAG 16639 Query 6756 GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCT 6815 | || | |||||||| || | |||||| |||| | | ||| ||| | | Sbjct 16638 GAGCAGGAGGAATACCAGTGAGTTCAAATTTACCCAAGAGGTGGTTGTCCTTTGTACGGG 16579 Query 6816 TACGTTCACCTTCATAGACTTTAAT--TGTCACCGCAGGTTGATTATCTTGTGCCG-TTG 6872 ||||||||| || |||||| ||| || ||||| ||||| || || ||| | ||| Sbjct 16578 CACGTTCACCCTCGAAGACTTGAATGTTGACACCG--GGTTGGTTGTCG-GTGTAGGTTG 16522 Query 6873 AGAAGATTTGTT-CTTTCTTAGATGG-AATCGTCGTATTTCTCGGAATAACCGGGGTCAT 6930 |||| ||| |||||| | ||| ||| || || |||| ||||| | || || | Sbjct 16521 AGAATGTTTCACACTTTCT--GTTGGGAATTGTTGTGTTTCGGGGAATGAGAGGAGTGAA 16464 Query 6931 AATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC 6990 | |||||| ||| |||| ||||| || ||||| | || |||||||| | ||||| Sbjct 16463 GACACCACCGGCAGTCTCGATACCAAGCGAGAGAGGCGCAACATCCAAGAGGAGAAGGTC 16404 Query 6991 TTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGC 7050 ||| ||| ||||| | | ||| || || ||||| | || ||||| || Sbjct 16403 TTGGGTCTTCTCGGAAGTGTCACCGGAAAGGATAGCAGCCTGGACGGCGGCACCGTAGGC 16344 Query 7051 GACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGT 7094 ||| ||||||||||| || || | ||| || | || |||| || Sbjct 16343 GACAGCCTCATCGGGATTGATAGATTTGTTGGGCTCCTTACTGT 16300 >seq19754 Length=10257 Score = 118 bits (130), Expect = 1e-21 Identities = 379/581 (65%), Gaps = 23/581 (4%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| ||||||| || |||| | |||| || | || | | |||| || || Sbjct 4863 TCCTCGAAACGAGCACGGGAGATTGATGCAGAGAAGTCGGCACCTTGGAATAAGGAGTCG 4804 Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 | || | || ||||| || || || || | ||||| || || || ||||| |||| Sbjct 4803 ACCTCGACAGTGGTTTGGGTGACG--GAGGAGAGTGTTCGTTTGGCACGTTCACAGGCCG 4746 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 || | ||| ||||| ||||| | | ||| || || | || ||| || || | Sbjct 4745 AACGGAGACGTCGAAGAGCACGGGCATCACCATCGATGTCGTGTTTGGTTTTTCGCTTGA 4686 Query 7425 ACTCTTCAGAGAAGTG-TCGAAG-GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 | || | |||||| || ||| ||| | | ||||||||||| ||||| | || || Sbjct 4685 ATTCGGCTTTGAAGTGCTCTAAGAGAGCGTTG--TCGAAATCTTCTCCACCAAGATGGGT 4628 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 ||| || ||||| || ||||| |||| | || || ||| | | |||||||| Sbjct 4627 ATCACCAGCGGTAGCCTTGACAGCAAAAACCCCACCGGTGATGGAGAGGAGAGAAACATC 4568 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACG---------TTCGTAT-CGTCGTCT- 7591 || |||||||| |||| ||| || || | ||| ||| | | | || ||| Sbjct 4567 GAAAGTACCACCTCCCAAGTCGAAGATCAAAACGGTGCGCTCCTTCTTGTCCTTCTTCTC 4508 Query 7592 -TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 || || | | | |||||| |||||| || || | || || || || ||||| || Sbjct 4507 ACTGGCCTCACCCAAACCGTAGGCGATA---GCGGCGGNAGGCTCGTTGATGATACGGAG 4451 Query 7651 ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAA 7710 | || || |||||||| | | ||||| || || | | || || || || || || Sbjct 4450 AACGTCAAGACCAGCAATGGCACCGGCATCCTTGGTAGATAACCGCTGAGAGTCATTGAA 4391 Query 7711 GTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGAT 7770 ||| || ||||| || | ||| || | | |||| | || || | | | || ||| | Sbjct 4390 GTAAGCGGGGACGGTAATGACTGCCTTCTTGACCTCTTTGCCTAATTTGGTCTCGGCGGT 4331 Query 7771 ATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || |||| |||||| | ||||| | || || |||| || Sbjct 4330 TTCCTTCAGTTTGGTCAAGACCATTGCAGAGATTTCTTGAG 4290 >seq20025 Length=28513 Score = 109 bits (120), Expect = 7e-19 Identities = 181/261 (69%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||||||||| ||||| || || || || || || || | ||| Sbjct 15891 ATCGAAATCTTCACCACCCAAGTGGGTATCACCAGCTGTAGCCAACACCTCGAACACACC 15832 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCA---AAAATGAG 7572 | || || | | |||||||| || ||||||||||| || ||| | ||||| Sbjct 15831 CTCATCGATCGAAAGGAGTGAAACATCGAAGGTACCACCACCAAGATCATAGACAATGAT 15772 Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | |||| || | ||| ||||||| ||||| || || ||||| || || || Sbjct 15771 TTGACGT--------TCACCCTTGGTCTTATCAAGACCATAGGCAATAGCGGCGGCGGTG 15720 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || | ||||||||| ||||| ||||| || || | ||||| || || || Sbjct 15719 GGCTCGTTGACGATACGAAGAACGTTCAAACCAGCGATCGTACCAGCATCCTTAGTAGCC 15660 Query 7691 TGTCGTTGCGAATCGTTAAAG 7711 || ||||| | || || ||| Sbjct 15659 TGACGTTGAGCGTCATTGAAG 15639 >seq18860 Length=11993 Score = 100 bits (110), Expect = 4e-16 Identities = 306/463 (66%), Gaps = 10/463 (2%) Strand=Plus/Plus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181 ||||| |||||||| | ||||||| |||||| ||||||| ||||| || | | Sbjct 9342 ATATCCAACGGATTGTAGTTCGGTATATCTGAACTCCATCCGGTTCCAATTCCACTTGAT 9401 Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACCG 183241 ||||| || || || ||||||| | ||| ||||| | || ||||||||||| || Sbjct 9402 CCATTAACTAAGACCATCGGTAAGACAGGTACATACCATTCCGGTTCGATTTGAGCTCCA 9461 Query 183242 TCGTC-GTCGAGATAGTTTAATACTGGATCATCTTTGGGATCAAAAAGTATTCTCGCGTT 183300 ||||| || || || ||||| || ||||||||| || || | | || | | Sbjct 9462 TCGTCAGTTAAG-TAATTTAAGACATGATCATCTTGAGGTGGGAAGATCACCCTGGTAAT 9520 Query 183301 TTTAGTCAAT-TTTGTAAATATATACC-TGGTTTGACTCGCGTCTTTACCACCCATGAGA 183358 || ||||| || ||||| ||||||| || | || || ||||||||||| | Sbjct 9521 CTT-TTCAATATTGGTAAAAATATACCTTGCAGAGGCT-GCATCTTTACCACCATTCGCT 9578 Query 183359 CGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATTA 183418 | |||||| ||||| ||| ||| |||| ||| |||||||| || ||| || Sbjct 9579 CTTGTACCGAATTGCCCATTAGGTGAAAGTACATTGATATTATTGCTTCCGACAAAGTTT 9638 Query 183419 TGTGCTAATTTTACAATTGTATCTGCCAAAGAGAC--TTCACCGTGGTGATACGATGTTT 183476 || || | ||||| | | ||| |||| | ||| ||||| ||||| | || | Sbjct 9639 TGAGCAAGGGCGACAATCG--TTTGCGTAAGACTCTGTTCTCCGTGATGATAAGCTGAAT 9696 Query 183477 TTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGTAAGATTCTTTGTGA 183536 ||| | | ||| | | || || || || || || || | | | | ||| | ||| Sbjct 9697 GTTCGGCACAGTAACCTCCCAACTGAGCTACTTTAATCTCCGCTTTCAATTTCCTCTTGA 9756 Query 183537 AACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATC 183579 | || || |||| ||||||||||| ||||| || || || Sbjct 9757 AGCAAGCAAATAAAACTTTTCGTTGACCGGGTTTAAAGCCGTC 9799 Score = 93.3 bits (102), Expect = 5e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181 ||||| | ||||||| | |||||||| |||||| ||||||| ||||| || | | Sbjct 3659 ATATCCATCGGATTATAATTTGGTATATCTGAACTCCATCCGGTTCCAATTCCACTTGAT 3718 Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACCG 183241 |||||||| || || | ||||| | ||| ||||| | || ||||||||||| || Sbjct 3719 CCATTTACTAAGACCATAGGTAAGACAGGTACATACCATTCTGGTTCGATTTGAGCTCCA 3778 Query 183242 TCGTC-GTCGAGATAGTTTAATACTGGATCATCTT 183275 ||||| ||| || || ||||| || ||||||||| Sbjct 3779 TCGTCAGTCAAG-TAATTTAAGACATGATCATCTT 3812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634960051817560