Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq21128 138 1e-27
seq9033 134 2e-26
>seq21128
Length=23319
Score = 138 bits (152), Expect = 1e-27
Identities = 409/623 (66%), Gaps = 12/623 (2%)
Strand=Plus/Minus
Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415
||||||||||| | ||| |||||| || ||||| ||||| || ||| | || |
Sbjct 15567 AATCAAAAGAACCTTGGTACCATCAAGTCATCGAACCTGTGTACTGAGATCATCGAGTAC 15508
Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475
||| | ||| ||| ||| || |||||||| || || || || || || | |||| |
Sbjct 15507 TCAGCCCCAGACGAGGTGGCGGTTTGTAACCTGGCCTCGATAGCGCTGCCGACGTATAT- 15449
Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535
|| || || | | ||||| |||| || |||||||| ||||| |||||
Sbjct 15448 ----CACCGATGGAGTC-TATGATTTCCAAAAGCTACACGAAGTAACGAAGGAAGTCACG 15394
Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 112595
||| | || | | |||||| || | ||||||||| | ||| || ||
Sbjct 15393 TGGAACTTGAATCGTATAATTGATGTGAACTACTACCCCGTTCCGGAAGCTAAAAAGTCC 15334
Query 112596 AATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC--ATTC 112653
|| |||||||| ||||| ||||| | || || | || | || |||| |||| | ||
Sbjct 15333 AACATGAGACATCGTCCCATTGGAATTGGAGTAAATGGATTGGCAGATGCATTCCAAATC 15274
Query 112654 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGA 112713
||| || | |||| || || ||||| ||| || | || || | || |||||||
Sbjct 15273 -TTGAAGCTTC-CATTCGACTCACCGGAAGCTAAGAAATTGAACGCCCAGATCTTTGAGA 15216
Query 112714 CAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATG 112773
|| | || ||||| || ||||| || ||| | || | ||| || || ||||||
Sbjct 15215 CACTTTACCACGCAGCACTTGAAGCCTCAAACGAGCTTGCCGTGGTGGAAGGCGCATATG 15156
Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 112833
|||| ||| ||||| || ||| ||||| | || || | |||||||||| ||
Sbjct 15155 AAACGTTTCCCGGTTCGCCCGCTAGTCAAGGAGAACTACAGTACGATATGTGGG-GCGTC 15097
Query 112834 AGACCAAGCTTCACTACGAC-TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 112892
| ||| | | ||| ||||||| ||| || ||| || |||| | || ||
Sbjct 15096 ACACCCTCCGACCTGTGGACATGGGACGATCTGAAAGAAAAGATTAAGGCTACCGGCCTG 15037
Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952
| ||| |||||| | || || ||||| || || || ||| |||||| |||||
Sbjct 15036 AGAAACTCACTTTTGCTTGCGCCGATGCCTACTGCTTCGACCAGTCAAATCATGGGTTTC 14977
Query 112953 AATGAATGCTTTGAACCCTACAC 112975
|||||||| ||||| || |||||
Sbjct 14976 AATGAATGTTTTGAGCCTTACAC 14954
>seq9033
Length=2832
Score = 134 bits (148), Expect = 2e-26
Identities = 408/623 (65%), Gaps = 12/623 (2%)
Strand=Plus/Plus
Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415
||||||||||| | || |||||| || ||||| ||||| || ||| |||| | |
Sbjct 2041 AATCAAAAGAACCTTGGCACCATCAAGTCATCGAACCTGTGTACTGAGATCATGGAGTAT 2100
Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475
||| | ||||||| ||| || |||| ||| || || ||||| || || | |||| |
Sbjct 2101 TCAGCCCCAGATGAGGTGGCGGTCTGTAGCCTGGCCTCGATCGCGCTGCCGACGTATAT- 2159
Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535
|| || || | | || || |||| || |||||||| ||||| || ||
Sbjct 2160 ----CACCGATGGAGTC-TATGCTTTCCAAAAGCTGCACGAAGTGACGAAGGAAGTTACG 2214
Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 112595
||| | || | | |||||| |||| ||||||||| | ||| || ||
Sbjct 2215 TGGAACTTGAATCGTATAATTGATGTGAATTACTACCCCGTTCCGGAAGCTAAAAAGTCC 2274
Query 112596 AATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTA-TTCATTCT 112654
|| |||||||| ||||| ||||| |||| || || | || |||| | ||||
Sbjct 2275 AACATGAGACATCGTCCCATTGGAATCGGAGTATCCGGATTGGCAGATGCATTTCACATC 2334
Query 112655 TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGAC 112714
||| || | |||| || || ||||| ||| || | ||||| | || || |||||
Sbjct 2335 TTGAAGCTTC-CATTCGACTCACCGGAAGCCAAGAAATTGAATGCCCAGATCTTCGAGAC 2393
Query 112715 AATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGA 112774
| | || ||||| || ||||| || ||| | || | || ||| || | |||||
Sbjct 2394 ACTTTACCACGCAGCGCTTGAAGCCTCAAACGAGCTTGCCGTGGCTGAAGGCGCGTATGA 2453
Query 112775 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA 112834
||| ||| ||||| || ||| ||||| | || |||| |||||||||| || |
Sbjct 2454 AACGTTTCCTGGTTCGCCCGCTAGTCAAGGAGAACTACAATACGATATGTGGG-GCGTCA 2512
Query 112835 GACCAAGCTTCACTACG--ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 112892
||| | | || | | ||||||| ||| || ||| ||||||| | || |
Sbjct 2513 CACCTTCCGAC-CTGTGGAAATGGGACGATCTGAAAGAAAAAATCAAGGCTACCGGCTTA 2571
Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952
| ||| |||| | | || |||||||| || || || ||| |||||| ||||
Sbjct 2572 AGAAACTCACTTTCGCTTGCGCCAATGCCTACTGCTTCGACCAGTCAAATCATGGGGTTC 2631
Query 112953 AATGAATGCTTTGAACCCTACAC 112975
|||||||| ||||| || |||||
Sbjct 2632 AATGAATGTTTTGAGCCTTACAC 2654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620573565826480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |