Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq21128 138 1e-27 seq9033 134 2e-26 >seq21128 Length=23319 Score = 138 bits (152), Expect = 1e-27 Identities = 409/623 (66%), Gaps = 12/623 (2%) Strand=Plus/Minus Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 ||||||||||| | ||| |||||| || ||||| ||||| || ||| | || | Sbjct 15567 AATCAAAAGAACCTTGGTACCATCAAGTCATCGAACCTGTGTACTGAGATCATCGAGTAC 15508 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 ||| | ||| ||| ||| || |||||||| || || || || || || | |||| | Sbjct 15507 TCAGCCCCAGACGAGGTGGCGGTTTGTAACCTGGCCTCGATAGCGCTGCCGACGTATAT- 15449 Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535 || || || | | ||||| |||| || |||||||| ||||| ||||| Sbjct 15448 ----CACCGATGGAGTC-TATGATTTCCAAAAGCTACACGAAGTAACGAAGGAAGTCACG 15394 Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 112595 ||| | || | | |||||| || | ||||||||| | ||| || || Sbjct 15393 TGGAACTTGAATCGTATAATTGATGTGAACTACTACCCCGTTCCGGAAGCTAAAAAGTCC 15334 Query 112596 AATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC--ATTC 112653 || |||||||| ||||| ||||| | || || | || | || |||| |||| | || Sbjct 15333 AACATGAGACATCGTCCCATTGGAATTGGAGTAAATGGATTGGCAGATGCATTCCAAATC 15274 Query 112654 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGA 112713 ||| || | |||| || || ||||| ||| || | || || | || ||||||| Sbjct 15273 -TTGAAGCTTC-CATTCGACTCACCGGAAGCTAAGAAATTGAACGCCCAGATCTTTGAGA 15216 Query 112714 CAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATG 112773 || | || ||||| || ||||| || ||| | || | ||| || || |||||| Sbjct 15215 CACTTTACCACGCAGCACTTGAAGCCTCAAACGAGCTTGCCGTGGTGGAAGGCGCATATG 15156 Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 112833 |||| ||| ||||| || ||| ||||| | || || | |||||||||| || Sbjct 15155 AAACGTTTCCCGGTTCGCCCGCTAGTCAAGGAGAACTACAGTACGATATGTGGG-GCGTC 15097 Query 112834 AGACCAAGCTTCACTACGAC-TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 112892 | ||| | | ||| ||||||| ||| || ||| || |||| | || || Sbjct 15096 ACACCCTCCGACCTGTGGACATGGGACGATCTGAAAGAAAAGATTAAGGCTACCGGCCTG 15037 Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952 | ||| |||||| | || || ||||| || || || ||| |||||| ||||| Sbjct 15036 AGAAACTCACTTTTGCTTGCGCCGATGCCTACTGCTTCGACCAGTCAAATCATGGGTTTC 14977 Query 112953 AATGAATGCTTTGAACCCTACAC 112975 |||||||| ||||| || ||||| Sbjct 14976 AATGAATGTTTTGAGCCTTACAC 14954 >seq9033 Length=2832 Score = 134 bits (148), Expect = 2e-26 Identities = 408/623 (65%), Gaps = 12/623 (2%) Strand=Plus/Plus Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 ||||||||||| | || |||||| || ||||| ||||| || ||| |||| | | Sbjct 2041 AATCAAAAGAACCTTGGCACCATCAAGTCATCGAACCTGTGTACTGAGATCATGGAGTAT 2100 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 ||| | ||||||| ||| || |||| ||| || || ||||| || || | |||| | Sbjct 2101 TCAGCCCCAGATGAGGTGGCGGTCTGTAGCCTGGCCTCGATCGCGCTGCCGACGTATAT- 2159 Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535 || || || | | || || |||| || |||||||| ||||| || || Sbjct 2160 ----CACCGATGGAGTC-TATGCTTTCCAAAAGCTGCACGAAGTGACGAAGGAAGTTACG 2214 Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 112595 ||| | || | | |||||| |||| ||||||||| | ||| || || Sbjct 2215 TGGAACTTGAATCGTATAATTGATGTGAATTACTACCCCGTTCCGGAAGCTAAAAAGTCC 2274 Query 112596 AATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTA-TTCATTCT 112654 || |||||||| ||||| ||||| |||| || || | || |||| | |||| Sbjct 2275 AACATGAGACATCGTCCCATTGGAATCGGAGTATCCGGATTGGCAGATGCATTTCACATC 2334 Query 112655 TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGAC 112714 ||| || | |||| || || ||||| ||| || | ||||| | || || ||||| Sbjct 2335 TTGAAGCTTC-CATTCGACTCACCGGAAGCCAAGAAATTGAATGCCCAGATCTTCGAGAC 2393 Query 112715 AATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGA 112774 | | || ||||| || ||||| || ||| | || | || ||| || | ||||| Sbjct 2394 ACTTTACCACGCAGCGCTTGAAGCCTCAAACGAGCTTGCCGTGGCTGAAGGCGCGTATGA 2453 Query 112775 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA 112834 ||| ||| ||||| || ||| ||||| | || |||| |||||||||| || | Sbjct 2454 AACGTTTCCTGGTTCGCCCGCTAGTCAAGGAGAACTACAATACGATATGTGGG-GCGTCA 2512 Query 112835 GACCAAGCTTCACTACG--ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 112892 ||| | | || | | ||||||| ||| || ||| ||||||| | || | Sbjct 2513 CACCTTCCGAC-CTGTGGAAATGGGACGATCTGAAAGAAAAAATCAAGGCTACCGGCTTA 2571 Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952 | ||| |||| | | || |||||||| || || || ||| |||||| |||| Sbjct 2572 AGAAACTCACTTTCGCTTGCGCCAATGCCTACTGCTTCGACCAGTCAAATCATGGGGTTC 2631 Query 112953 AATGAATGCTTTGAACCCTACAC 112975 |||||||| ||||| || ||||| Sbjct 2632 AATGAATGTTTTGAGCCTTACAC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620573565826480