Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18860 102 1e-16 >seq18860 Length=11993 Score = 102 bits (112), Expect = 1e-16 Identities = 179/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 168337 TTTCCTTGTTGAAGTCCCAAAATTTTCTTGAGATCATTGAACTCCTGATTAGATGTCAAC 168396 || |||||||||||||||| ||||||||||| | | || ||| ||| | | ||| Sbjct 10561 TTGCCTTGTTGAAGTCCCATAATTTTCTTGATGTGTTGGATCTCAGCATTCGCTAACAAT 10620 Query 168397 TG--TGCCACCGATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCCCAT 168454 || | |||| | | || | |||||| || ||||| ||||| || || |||| Sbjct 10621 TGACTTCCACTG--GCTTCTCGAACGTTTAGTAGTTTTCCACGAAGTGGGAAAACACCAT 10678 Query 168455 AATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTCGCTGAATCACCCT 168514 ||| ||| | || | ||| || | ||||| ||||| | | ||| |||||||| || | Sbjct 10679 AATTATCACGTCCGATGACCGATAATCCAGCAACAGCCAAGGATTTGGCTGAATCTCCTT 10738 Query 168515 CTGTCACGATGAGTGTACACTTTCCAGACTGTGCCGTACCAGCTTTGTTCGCATCGTCCA 168574 | || | |||||| ||||| | | | | | || || || || || ||||| |||| Sbjct 10739 CCGTTAAGATGAGAGTACAATCTGCTGCTTTCTTGGTCCCTGCGTTATTGGCATCTTCCA 10798 Query 168575 ATTTGGGGATACCAGTGAT 168593 ||||| |||||| ||||| Sbjct 10799 ATTTGACGATACCGGTGAT 10817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588815805890200