Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq19309 163 6e-35 seq20561 89.7 1e-12 >seq19309 Length=20099 Score = 163 bits (180), Expect = 6e-35 Identities = 150/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| ||||||||||| ||||| ||||| || || ||||||| || ||||| Sbjct 1615 AACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTTCGACCGTCTTC 1556 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| ||||| |||||||| |||||||| || ||||| || || || |||||||| Sbjct 1555 AAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCCTTGTCTTG 1496 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || ||||| ||||| || ||| ||||| || || | ||||| Sbjct 1495 AATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGAGTGATGGTCTT 1436 Query 195111 TCCTGTCAAA 195120 ||| |||||| Sbjct 1435 TCCAGTCAAA 1426 Score = 156 bits (172), Expect = 9e-33 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| || || ||||| ||||||||||| || || | |||||||| || || Sbjct 1316 TGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCAAGTTGT 1257 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || |||||||||||||| ||||| ||||||||||||||||| || Sbjct 1256 TTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGAATCTTG 1197 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || |||||||| || ||| ||| || || ||||| | ||||| || || Sbjct 1196 GCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGT 1138 Score = 156 bits (172), Expect = 9e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 || ||| || | ||||||||| ||||| |||||||| |||||||||||||| |||| ||| Sbjct 2195 TCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCC 2136 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||||| | || |||||||| ||||| | ||| ||||||||||| || || ||||| || Sbjct 2135 GTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTT 2076 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||| ||||| || ||||| || ||||| || ||||| || ||||| ||||| | Sbjct 2075 GTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGAT 2016 Query 195105 CGTCTTTCCTGTCA 195118 ||||| || |||| Sbjct 2015 GGTCTTACCAGTCA 2002 Score = 136 bits (150), Expect = 9e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| || || || || ||||||||||| || || || | |||||||| Sbjct 1900 ACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGACCATCTTCC 1841 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| || || || || |||||||| ||||| ||||||||||| ||||| || Sbjct 1840 AGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGG 1781 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||| || || ||||| || ||| || || || |||| || || Sbjct 1780 ATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGACCTCCAGCGTAATTGTTTTA 1721 Query 195112 CCTGT 195116 || || Sbjct 1720 CCGGT 1716 >seq20561 Length=8220 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 195008 AGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGT 195067 |||||||||||||||||||||| ||||||||||| || |||||||| || ||| || | Sbjct 5872 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 5813 Query 195068 TCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || || ||||| | | ||| || || ||||| | ||||| || || Sbjct 5812 TGTCGATTGTGTCGGCAGCTTCGACCTCGAGGGTGATGGTCTTACCCGT 5764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109172290745153