Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 163 6e-35
seq20561 89.7 1e-12
>seq19309
Length=20099
Score = 163 bits (180), Expect = 6e-35
Identities = 150/190 (79%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| ||||||||||| ||||| ||||| || || ||||||| || |||||
Sbjct 1615 AACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTTCGACCGTCTTC 1556
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| ||||| ||||| |||||||| |||||||| || ||||| || || || ||||||||
Sbjct 1555 AAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCCTTGTCTTG 1496
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || |||||| || ||||| ||||| || ||| ||||| || || | |||||
Sbjct 1495 AATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGAGTGATGGTCTT 1436
Query 195111 TCCTGTCAAA 195120
||| ||||||
Sbjct 1435 TCCAGTCAAA 1426
Score = 156 bits (172), Expect = 9e-33
Identities = 142/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
||||||||||| || || ||||| ||||||||||| || || | |||||||| || ||
Sbjct 1316 TGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCAAGTTGT 1257
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| || |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1256 TTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGAATCTTG 1197
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || |||||||| || ||| ||| || || ||||| | ||||| || ||
Sbjct 1196 GCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGT 1138
Score = 156 bits (172), Expect = 9e-33
Identities = 151/194 (78%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984
|| ||| || | ||||||||| ||||| |||||||| |||||||||||||| |||| |||
Sbjct 2195 TCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCC 2136
Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044
||||| | || |||||||| ||||| | ||| ||||||||||| || || ||||| ||
Sbjct 2135 GTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTT 2076
Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104
||| ||||| || ||||| || ||||| || ||||| || ||||| ||||| |
Sbjct 2075 GTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGAT 2016
Query 195105 CGTCTTTCCTGTCA 195118
||||| || ||||
Sbjct 2015 GGTCTTACCAGTCA 2002
Score = 136 bits (150), Expect = 9e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| |||||||| || || || || ||||||||||| || || || | ||||||||
Sbjct 1900 ACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGACCATCTTCC 1841
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| || ||||| || || || || |||||||| ||||| ||||||||||| ||||| ||
Sbjct 1840 AGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGG 1781
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||||||||| || || ||||| || ||| || || || |||| || ||
Sbjct 1780 ATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGACCTCCAGCGTAATTGTTTTA 1721
Query 195112 CCTGT 195116
|| ||
Sbjct 1720 CCGGT 1716
>seq20561
Length=8220
Score = 89.7 bits (98), Expect = 1e-12
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 195008 AGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGT 195067
|||||||||||||||||||||| ||||||||||| || |||||||| || ||| || |
Sbjct 5872 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 5813
Query 195068 TCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || || ||||| | | ||| || || ||||| | ||||| || ||
Sbjct 5812 TGTCGATTGTGTCGGCAGCTTCGACCTCGAGGGTGATGGTCTTACCCGT 5764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109172290745153
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |