Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq18202 123 2e-22
seq19309 111 1e-18
seq14910 93.3 3e-13
seq14909 93.3 3e-13
seq20025 91.5 1e-12
>seq18202
Length=17611
Score = 123 bits (136), Expect = 2e-22
Identities = 176/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||| | || || || |||||||||||||| | ||||| ||| |||| ||||| | | ||
Sbjct 15944 GCTGTACGACGACTTCGAACTGCTTGCGAACGTGCCAAGCGAACTCTCTCATCCGCTGCT 16003
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|||||| |||| ||| | ||||| | || ||||| | || | | ||| || || |
Sbjct 16004 CAAACCTCTATCGAAATTGATTCCCTTTTCGAGGGTGTCGACTTCTACACGTCTCTTACC 16063
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
||||| ||| || || | || || | || ||||| || || || || || ||
Sbjct 16064 CGGGCCCGATTCGAGGAACTCTGCCAAGACTTGTTCAGAAAGACTATGGAGCCTGTCGAG 16123
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
|||| || |||||||| |||||||| || |||| || ||||| ||||| | ||||||
Sbjct 16124 AAAGTGTTGAGAGATTCCAAGATTGACAAGGCCAATGTTCATGAGATTGTATTGGTTGGT 16183
Query 552135 GGATCTAC 552142
|| || ||
Sbjct 16184 GGTTCCAC 16191
Score = 104 bits (114), Expect = 2e-16
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460
|||| | || || || ||||| || |||||||| || || ||||| || || |||||||
Sbjct 15532 CAGTTGTCACCGTCCCTGCATACTTCAATGACTCTCAGCGACAAGCCACCAAGGATGCTG 15591
Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520
| || |||| || || |||||||||||||||| |||||||| ||||| || | |
Sbjct 15592 GTTTGATCTCTGGTCTCAACATTCTTCGTATTATCAACGAACCTACCGCTGCCGCCATCG 15651
Query 550521 CATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAG 550580
| || || ||||| || | | | | || | ||||| |||||||| ||| |||||
Sbjct 15652 CCTACGGTCTTGACAAGAAGACCGTTGGTGAGCGCAATGTGCTCATCTTCGATCTTGGAG 15711
Query 550581 GT 550582
||
Sbjct 15712 GT 15713
>seq19309
Length=20099
Score = 111 bits (122), Expect = 1e-18
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||||||||| | |||||| || ||| || ||| |||||||| || || || | |
Sbjct 1331 AGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGT 1272
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||||||||||||||||||||| || || | ||| || || || ||||| ||||||
Sbjct 1271 CCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCT 1212
Query 563377 TTATCTTGAATTTT 563390
|| |||||||| ||
Sbjct 1211 TTGTCTTGAATCTT 1198
Score = 102 bits (112), Expect = 7e-16
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || || | |||||||| ||||| ||| ||||| ||||| |||||||
Sbjct 1623 AGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTTCGA 1564
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||||||||||| ||||| ||||| ||||| | ||| ||||||||||| || || ||
Sbjct 1563 CCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCC 1504
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| |||||||| || || || |||||||| || | | || | | |||||||||
Sbjct 1503 TTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAG-GATTCGACTTCGAGAGT 1445
Query 563436 AACAGTTTTACCAGT 563450
| || || |||||
Sbjct 1444 GATGGTCTTTCCAGT 1430
Score = 102 bits (112), Expect = 7e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| ||||||||||| || ||| || |||||||||||||| || || |
Sbjct 1909 AGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGA 1850
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||| |||||||| || |||||||| || | ||| ||||| || ||||| |||||
Sbjct 1849 CCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCC 1790
Query 563377 TTATCTTGAATTTT 563390
|| || || |||||
Sbjct 1789 TTGTCCTGGATTTT 1776
>seq14910
Length=9531
Score = 93.3 bits (102), Expect = 3e-13
Identities = 151/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 344420 TAAATGGAGTTGCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATT 344479
|||| || || |||||||| | ||| |||||| ||||||||| || | |||||
Sbjct 4921 TAAACGGTGTGGCATCTCCTTCGTTCCCCGTAATTGTGGAAACTTTACTTAAAAGACATT 4862
Query 344480 CAATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAG 344539
||| ||| || || |||||||| || || || || |||||||||||||||||| |
Sbjct 4861 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATAATAATATCTG 4802
Query 344540 GAATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTTTA-AATCCAACTGTT 344598
|| | ||| || ||||| | |||| | | | || | | | |||||| |||
Sbjct 4801 GACAAATCCCTTCAGAGGTAAATGGCATATCTTCTTG-TCTATATAAGATTCCAACGGTT 4743
Query 344599 CCTTTTTGTCCAGCTCTTGATGAGAATTTATCACC 344633
||||| |||||| |||||||| || ||||| ||
Sbjct 4742 CCTTTCTGTCCATGTCTTGATGCAAACTTATCTCC 4708
>seq14909
Length=9444
Score = 93.3 bits (102), Expect = 3e-13
Identities = 151/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 344420 TAAATGGAGTTGCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATT 344479
|||| || || |||||||| | ||| |||||| ||||||||| || | |||||
Sbjct 4921 TAAACGGTGTGGCATCTCCTTCGTTCCCCGTAATTGTGGAAACTTTACTTAAAAGACATT 4862
Query 344480 CAATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAG 344539
||| ||| || || |||||||| || || || || |||||||||||||||||| |
Sbjct 4861 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATAATAATATCTG 4802
Query 344540 GAATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTTTA-AATCCAACTGTT 344598
|| | ||| || ||||| | |||| | | | || | | | |||||| |||
Sbjct 4801 GACAAATCCCTTCAGAGGTAAATGGCATATCTTCTTG-TCTATATAAGATTCCAACGGTT 4743
Query 344599 CCTTTTTGTCCAGCTCTTGATGAGAATTTATCACC 344633
||||| |||||| |||||||| || ||||| ||
Sbjct 4742 CCTTTCTGTCCATGTCTTGATGCAAACTTATCTCC 4708
>seq20025
Length=28513
Score = 91.5 bits (100), Expect = 1e-12
Identities = 90/114 (79%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 550424 TTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGT 550482
|| |||||| | |||||||| |||||||| |||||||| ||| || ||||| | || ||
Sbjct 15640 TTCAATGACGCTCAACGTCAGGCTACTAAGGATGCTGGTACG-ATCGCTGGTTTGAACGT 15698
Query 550483 TCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
||||||||| |||| || || || || || || |||| ||||| ||||||||
Sbjct 15699 TCTTCGTATCGTCAACGAGCCCACCGCCGCCGCTATTGCCTATGGTCTTGATAA 15752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028145285946910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |