Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq18202 123 2e-22 seq19309 111 1e-18 seq14910 93.3 3e-13 seq14909 93.3 3e-13 seq20025 91.5 1e-12 >seq18202 Length=17611 Score = 123 bits (136), Expect = 2e-22 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| | || || || |||||||||||||| | ||||| ||| |||| ||||| | | || Sbjct 15944 GCTGTACGACGACTTCGAACTGCTTGCGAACGTGCCAAGCGAACTCTCTCATCCGCTGCT 16003 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 |||||| |||| ||| | ||||| | || ||||| | || | | ||| || || | Sbjct 16004 CAAACCTCTATCGAAATTGATTCCCTTTTCGAGGGTGTCGACTTCTACACGTCTCTTACC 16063 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| ||| || || | || || | || ||||| || || || || || || Sbjct 16064 CGGGCCCGATTCGAGGAACTCTGCCAAGACTTGTTCAGAAAGACTATGGAGCCTGTCGAG 16123 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 |||| || |||||||| |||||||| || |||| || ||||| ||||| | |||||| Sbjct 16124 AAAGTGTTGAGAGATTCCAAGATTGACAAGGCCAATGTTCATGAGATTGTATTGGTTGGT 16183 Query 552135 GGATCTAC 552142 || || || Sbjct 16184 GGTTCCAC 16191 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460 |||| | || || || ||||| || |||||||| || || ||||| || || ||||||| Sbjct 15532 CAGTTGTCACCGTCCCTGCATACTTCAATGACTCTCAGCGACAAGCCACCAAGGATGCTG 15591 Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 | || |||| || || |||||||||||||||| |||||||| ||||| || | | Sbjct 15592 GTTTGATCTCTGGTCTCAACATTCTTCGTATTATCAACGAACCTACCGCTGCCGCCATCG 15651 Query 550521 CATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAG 550580 | || || ||||| || | | | | || | ||||| |||||||| ||| ||||| Sbjct 15652 CCTACGGTCTTGACAAGAAGACCGTTGGTGAGCGCAATGTGCTCATCTTCGATCTTGGAG 15711 Query 550581 GT 550582 || Sbjct 15712 GT 15713 >seq19309 Length=20099 Score = 111 bits (122), Expect = 1e-18 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||||||||| | |||||| || ||| || ||| |||||||| || || || | | Sbjct 1331 AGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGT 1272 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||||||||||||||| || || | ||| || || || ||||| |||||| Sbjct 1271 CCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCT 1212 Query 563377 TTATCTTGAATTTT 563390 || |||||||| || Sbjct 1211 TTGTCTTGAATCTT 1198 Score = 102 bits (112), Expect = 7e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | |||||||| ||||| ||| ||||| ||||| ||||||| Sbjct 1623 AGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTTCGA 1564 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||| ||||| ||||| ||||| | ||| ||||||||||| || || || Sbjct 1563 CCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCC 1504 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || |||||||| || || || |||||||| || | | || | | ||||||||| Sbjct 1503 TTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAG-GATTCGACTTCGAGAGT 1445 Query 563436 AACAGTTTTACCAGT 563450 | || || ||||| Sbjct 1444 GATGGTCTTTCCAGT 1430 Score = 102 bits (112), Expect = 7e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| || ||| || |||||||||||||| || || | Sbjct 1909 AGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGA 1850 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| |||||||| || |||||||| || | ||| ||||| || ||||| ||||| Sbjct 1849 CCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCC 1790 Query 563377 TTATCTTGAATTTT 563390 || || || ||||| Sbjct 1789 TTGTCCTGGATTTT 1776 >seq14910 Length=9531 Score = 93.3 bits (102), Expect = 3e-13 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 344420 TAAATGGAGTTGCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATT 344479 |||| || || |||||||| | ||| |||||| ||||||||| || | ||||| Sbjct 4921 TAAACGGTGTGGCATCTCCTTCGTTCCCCGTAATTGTGGAAACTTTACTTAAAAGACATT 4862 Query 344480 CAATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAG 344539 ||| ||| || || |||||||| || || || || |||||||||||||||||| | Sbjct 4861 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATAATAATATCTG 4802 Query 344540 GAATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTTTA-AATCCAACTGTT 344598 || | ||| || ||||| | |||| | | | || | | | |||||| ||| Sbjct 4801 GACAAATCCCTTCAGAGGTAAATGGCATATCTTCTTG-TCTATATAAGATTCCAACGGTT 4743 Query 344599 CCTTTTTGTCCAGCTCTTGATGAGAATTTATCACC 344633 ||||| |||||| |||||||| || ||||| || Sbjct 4742 CCTTTCTGTCCATGTCTTGATGCAAACTTATCTCC 4708 >seq14909 Length=9444 Score = 93.3 bits (102), Expect = 3e-13 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 344420 TAAATGGAGTTGCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATT 344479 |||| || || |||||||| | ||| |||||| ||||||||| || | ||||| Sbjct 4921 TAAACGGTGTGGCATCTCCTTCGTTCCCCGTAATTGTGGAAACTTTACTTAAAAGACATT 4862 Query 344480 CAATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAG 344539 ||| ||| || || |||||||| || || || || |||||||||||||||||| | Sbjct 4861 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATAATAATATCTG 4802 Query 344540 GAATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTTTA-AATCCAACTGTT 344598 || | ||| || ||||| | |||| | | | || | | | |||||| ||| Sbjct 4801 GACAAATCCCTTCAGAGGTAAATGGCATATCTTCTTG-TCTATATAAGATTCCAACGGTT 4743 Query 344599 CCTTTTTGTCCAGCTCTTGATGAGAATTTATCACC 344633 ||||| |||||| |||||||| || ||||| || Sbjct 4742 CCTTTCTGTCCATGTCTTGATGCAAACTTATCTCC 4708 >seq20025 Length=28513 Score = 91.5 bits (100), Expect = 1e-12 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 550424 TTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGT 550482 || |||||| | |||||||| |||||||| |||||||| ||| || ||||| | || || Sbjct 15640 TTCAATGACGCTCAACGTCAGGCTACTAAGGATGCTGGTACG-ATCGCTGGTTTGAACGT 15698 Query 550483 TCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||||| |||| || || || || || || |||| ||||| |||||||| Sbjct 15699 TCTTCGTATCGTCAACGAGCCCACCGCCGCCGCTATTGCCTATGGTCTTGATAA 15752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028145285946910