Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 122 7e-23
>seq19309
Length=20099
Score = 122 bits (134), Expect = 7e-23
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 101237 ACATTT--CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGT 101294
|||||| ||||| | ||| || || || || ||||| ||||| || ||||| || ||||
Sbjct 2214 ACATTTGACCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGT 2155
Query 101295 AATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGAT 101354
||||||| | |||| | || |||||||| ||||||||||| || || |||||||| |
Sbjct 2154 AATCGGCAAGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGT 2095
Query 101355 CGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACG 101414
| || || || ||||| || || ||||| || ||| ||| | || | || || || |
Sbjct 2094 CTGGTGGGATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATG 2035
Query 101415 TTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||||| || |||| || || || ||
Sbjct 2034 ACTCGACTTCGAGGGTGATGGTCTTACCAGT 2004
Score = 118 bits (130), Expect = 8e-22
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| || | || ||| | || | |||||| || ||||| || || ||||||||||| |
Sbjct 1920 TTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAG 1861
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
||| || | |||| |||| ||| ||||| ||||| |||| ||| |||||||| || |
Sbjct 1860 CGAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGG 1801
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
|||||||||| || || || ||||| || || | || | ||||| || | ||| |
Sbjct 1800 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGA 1741
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445
| || || || | ||||| |||||
Sbjct 1740 CCTCCAGCGTAATTGTTTTACCGGT 1716
Score = 104 bits (114), Expect = 2e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| |||||||| || ||||| || || || ||||||||||| | || | |||| ||
Sbjct 1322 ACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCA 1263
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||| || || ||||| || | ||| ||||| || || ||||| |||||||| ||||||
Sbjct 1262 AGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGA 1203
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | || || || | ||| || || || |||| || |||
Sbjct 1202 ATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTG 1143
Query 101441 CCGGT 101445
|||||
Sbjct 1142 CCGGT 1138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396173311797963
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |