Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq19309 122 7e-23 >seq19309 Length=20099 Score = 122 bits (134), Expect = 7e-23 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 101237 ACATTT--CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGT 101294 |||||| ||||| | ||| || || || || ||||| ||||| || ||||| || |||| Sbjct 2214 ACATTTGACCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGT 2155 Query 101295 AATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGAT 101354 ||||||| | |||| | || |||||||| ||||||||||| || || |||||||| | Sbjct 2154 AATCGGCAAGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGT 2095 Query 101355 CGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACG 101414 | || || || ||||| || || ||||| || ||| ||| | || | || || || | Sbjct 2094 CTGGTGGGATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATG 2035 Query 101415 TTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||||| || |||| || || || || Sbjct 2034 ACTCGACTTCGAGGGTGATGGTCTTACCAGT 2004 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || | |||||| || ||||| || || ||||||||||| | Sbjct 1920 TTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAG 1861 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||| || | |||| |||| ||| ||||| ||||| |||| ||| |||||||| || | Sbjct 1860 CGAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGG 1801 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || || || ||||| || || | || | ||||| || | ||| | Sbjct 1800 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGA 1741 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445 | || || || | ||||| ||||| Sbjct 1740 CCTCCAGCGTAATTGTTTTACCGGT 1716 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| || ||||| || || || ||||||||||| | || | |||| || Sbjct 1322 ACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCA 1263 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || ||||| || | ||| ||||| || || ||||| |||||||| |||||| Sbjct 1262 AGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGA 1203 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | ||| || || || |||| || ||| Sbjct 1202 ATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTG 1143 Query 101441 CCGGT 101445 ||||| Sbjct 1142 CCGGT 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396173311797963