Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq19309 100 2e-16 >seq19309 Length=20099 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28578 ACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTGGCCGATCTCAA-GCA 28636 || ||||| ||||| ||| |||| || | || || || | | | || |||| || Sbjct 2004 ACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAAGCC 2063 Query 28637 AAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAA 28696 || | || ||||| || || | || ||| |||||| || | |||||||| || || Sbjct 2064 AAGATTCAG-GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGTAA 2122 Query 28697 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 |||||||||||| ||| | |||||||| ||||||||||| || |||||||| || Sbjct 2123 ACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCA 2182 Query 28757 CATGGTATTAAGATTACGAGGAGG 28780 | |||| || ||||||| ||||| Sbjct 2183 CTTGGTCTTGCGATTACGTGGAGG 2206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425291987831661