Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 125 5e-23
seq7315 98.7 6e-15
seq14910 91.5 1e-12
seq14909 91.5 1e-12
>seq19309
Length=20099
Score = 125 bits (138), Expect = 5e-23
Identities = 125/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || | ||||| || ||||| || || || ||||| |||||
Sbjct 1627 ACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGT 1568
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 1567 TCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACC 1508
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
||||||||||||||||| |||||| ||||| || ||
Sbjct 1507 CTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTC 1466
Score = 120 bits (132), Expect = 2e-21
Identities = 147/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||||||||| | |||||| || ||| || || || ||||| || || ||
Sbjct 1335 ACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGT 1276
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| |||||||||||| ||||| ||||| || ||||||||||| || || ||||| ||
Sbjct 1275 GCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACC 1216
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||| |||||||||||||| |||||| ||||| ||||| | | | || ||
Sbjct 1215 TTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAG 1156
Query 480731 GGTAATAGTTTTACCGGTGAG 480751
||| || || || ||||||||
Sbjct 1155 GGTGATGGTCTTGCCGGTGAG 1135
Score = 116 bits (128), Expect = 2e-20
Identities = 149/203 (73%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||||||||| || ||| || | ||| |||||||| || ||
Sbjct 1913 ACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGT 1854
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| |||||| ||||| || ||||||||||| |||||||||||||| || ||||| ||
Sbjct 1853 GCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCC 1794
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||| || || || ||||| || || || || | || | | || |
Sbjct 1793 TTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGA-CCTCCA 1735
Query 480730 GGGTAATAGTTTTACCGGTGAGA 480752
| ||||| ||||||||||| |||
Sbjct 1734 GCGTAATTGTTTTACCGGTAAGA 1712
>seq7315
Length=20512
Score = 98.7 bits (108), Expect = 6e-15
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 748692 GAtttttttAACAAACCTGTTTATTTAACAGTATCAAATCAATTACATTTAGAATGTTTT 748751
|| ||||| ||| |||||| ||| ||||| || || | ||||||||||||||| |||
Sbjct 4372 GAGTTTTTCAACCAACCTGCTTACTTAACTGTTTCTACACAATTACATTTAGAAGCCTTT 4313
Query 748752 GCTCATGGATTAGGCTATGTTTATACAATAACACCAGCGACTCGTGGTGAACCTTCACAA 748811
|| |||||||||| ||||||||| || ||| | | | |||| |||| |||
Sbjct 4312 GCGAATGGATTAGGTAGAGTTTATACATTAGGACCTTGTTTTAGAGCTGAAACTTCTCAA 4253
Query 748812 AGTACTAAACATTTAGCACATTTTTCTATGTTAGAAGTAGAA 748853
| || | ||||||||| | |||| |||||||||| ||||
Sbjct 4252 ACTAATCGACATTTAGCTGAATTTTGGATGTTAGAAGCAGAA 4211
>seq14910
Length=9531
Score = 91.5 bits (100), Expect = 1e-12
Identities = 138/191 (72%), Gaps = 8/191 (4%)
Strand=Plus/Minus
Query 269318 TAAATGGTGTCGCATCACCATATACTCCTTTAATAGCACATACTTTTCCTAATAGACATT 269377
|||| ||||| ||||| || | || |||| | | ||||| | ||| |||||||
Sbjct 4921 TAAACGGTGTGGCATCTCCTTCGTTCCCCGTAATTGTGGAAACTTTACTTAAAAGACATT 4862
Query 269378 CAATCAATTGTCCAATGGTCATACGTTTTGGCATACAATTAGGATTAATAATAATATCTG 269437
||| || |||||||| ||||| || ||| || || ||||||||||||||||||||
Sbjct 4861 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATAATAATATCTG 4802
Query 269438 GCACAAGTCCAGATTTA---GTAAATGGCATATCTGCTCTATGAATTTTA-AATCCAACT 269493
| |||| ||| || | ||||||||||||||| || | | || | | | ||||||
Sbjct 4801 G-ACAAATCC--CTTCAGAGGTAAATGGCATATCTTCT-TGTCTATATAAGATTCCAACG 4746
Query 269494 GTACCTTTTTG 269504
|| ||||| ||
Sbjct 4745 GTTCCTTTCTG 4735
>seq14909
Length=9444
Score = 91.5 bits (100), Expect = 1e-12
Identities = 138/191 (72%), Gaps = 8/191 (4%)
Strand=Plus/Minus
Query 269318 TAAATGGTGTCGCATCACCATATACTCCTTTAATAGCACATACTTTTCCTAATAGACATT 269377
|||| ||||| ||||| || | || |||| | | ||||| | ||| |||||||
Sbjct 4921 TAAACGGTGTGGCATCTCCTTCGTTCCCCGTAATTGTGGAAACTTTACTTAAAAGACATT 4862
Query 269378 CAATCAATTGTCCAATGGTCATACGTTTTGGCATACAATTAGGATTAATAATAATATCTG 269437
||| || |||||||| ||||| || ||| || || ||||||||||||||||||||
Sbjct 4861 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATAATAATATCTG 4802
Query 269438 GCACAAGTCCAGATTTA---GTAAATGGCATATCTGCTCTATGAATTTTA-AATCCAACT 269493
| |||| ||| || | ||||||||||||||| || | | || | | | ||||||
Sbjct 4801 G-ACAAATCC--CTTCAGAGGTAAATGGCATATCTTCT-TGTCTATATAAGATTCCAACG 4746
Query 269494 GTACCTTTTTG 269504
|| ||||| ||
Sbjct 4745 GTTCCTTTCTG 4735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267245850915332
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |