Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq19309 125 5e-23 seq7315 98.7 6e-15 seq14910 91.5 1e-12 seq14909 91.5 1e-12 >seq19309 Length=20099 Score = 125 bits (138), Expect = 5e-23 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| || ||||| || || || ||||| ||||| Sbjct 1627 ACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGT 1568 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||||||||||||||||| ||||| ||||||||||||||||||||||| || || Sbjct 1567 TCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACC 1508 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||||||||||| |||||| ||||| || || Sbjct 1507 CTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTC 1466 Score = 120 bits (132), Expect = 2e-21 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||||||||| | |||||| || ||| || || || ||||| || || || Sbjct 1335 ACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGT 1276 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||||||||| ||||| ||||| || ||||||||||| || || ||||| || Sbjct 1275 GCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACC 1216 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| |||||||||||||| |||||| ||||| ||||| | | | || || Sbjct 1215 TTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAG 1156 Query 480731 GGTAATAGTTTTACCGGTGAG 480751 ||| || || || |||||||| Sbjct 1155 GGTGATGGTCTTGCCGGTGAG 1135 Score = 116 bits (128), Expect = 2e-20 Identities = 149/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| || ||| || | ||| |||||||| || || Sbjct 1913 ACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGT 1854 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| ||||| || ||||||||||| |||||||||||||| || ||||| || Sbjct 1853 GCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCC 1794 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || || || ||||| || || || || | || | | || | Sbjct 1793 TTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGA-CCTCCA 1735 Query 480730 GGGTAATAGTTTTACCGGTGAGA 480752 | ||||| ||||||||||| ||| Sbjct 1734 GCGTAATTGTTTTACCGGTAAGA 1712 >seq7315 Length=20512 Score = 98.7 bits (108), Expect = 6e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 748692 GAtttttttAACAAACCTGTTTATTTAACAGTATCAAATCAATTACATTTAGAATGTTTT 748751 || ||||| ||| |||||| ||| ||||| || || | ||||||||||||||| ||| Sbjct 4372 GAGTTTTTCAACCAACCTGCTTACTTAACTGTTTCTACACAATTACATTTAGAAGCCTTT 4313 Query 748752 GCTCATGGATTAGGCTATGTTTATACAATAACACCAGCGACTCGTGGTGAACCTTCACAA 748811 || |||||||||| ||||||||| || ||| | | | |||| |||| ||| Sbjct 4312 GCGAATGGATTAGGTAGAGTTTATACATTAGGACCTTGTTTTAGAGCTGAAACTTCTCAA 4253 Query 748812 AGTACTAAACATTTAGCACATTTTTCTATGTTAGAAGTAGAA 748853 | || | ||||||||| | |||| |||||||||| |||| Sbjct 4252 ACTAATCGACATTTAGCTGAATTTTGGATGTTAGAAGCAGAA 4211 >seq14910 Length=9531 Score = 91.5 bits (100), Expect = 1e-12 Identities = 138/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 269318 TAAATGGTGTCGCATCACCATATACTCCTTTAATAGCACATACTTTTCCTAATAGACATT 269377 |||| ||||| ||||| || | || |||| | | ||||| | ||| ||||||| Sbjct 4921 TAAACGGTGTGGCATCTCCTTCGTTCCCCGTAATTGTGGAAACTTTACTTAAAAGACATT 4862 Query 269378 CAATCAATTGTCCAATGGTCATACGTTTTGGCATACAATTAGGATTAATAATAATATCTG 269437 ||| || |||||||| ||||| || ||| || || |||||||||||||||||||| Sbjct 4861 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATAATAATATCTG 4802 Query 269438 GCACAAGTCCAGATTTA---GTAAATGGCATATCTGCTCTATGAATTTTA-AATCCAACT 269493 | |||| ||| || | ||||||||||||||| || | | || | | | |||||| Sbjct 4801 G-ACAAATCC--CTTCAGAGGTAAATGGCATATCTTCT-TGTCTATATAAGATTCCAACG 4746 Query 269494 GTACCTTTTTG 269504 || ||||| || Sbjct 4745 GTTCCTTTCTG 4735 >seq14909 Length=9444 Score = 91.5 bits (100), Expect = 1e-12 Identities = 138/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 269318 TAAATGGTGTCGCATCACCATATACTCCTTTAATAGCACATACTTTTCCTAATAGACATT 269377 |||| ||||| ||||| || | || |||| | | ||||| | ||| ||||||| Sbjct 4921 TAAACGGTGTGGCATCTCCTTCGTTCCCCGTAATTGTGGAAACTTTACTTAAAAGACATT 4862 Query 269378 CAATCAATTGTCCAATGGTCATACGTTTTGGCATACAATTAGGATTAATAATAATATCTG 269437 ||| || |||||||| ||||| || ||| || || |||||||||||||||||||| Sbjct 4861 CAACTAAATGTCCAATCGTCATTCGAGATGGAATCGCATGAGGATTAATAATAATATCTG 4802 Query 269438 GCACAAGTCCAGATTTA---GTAAATGGCATATCTGCTCTATGAATTTTA-AATCCAACT 269493 | |||| ||| || | ||||||||||||||| || | | || | | | |||||| Sbjct 4801 G-ACAAATCC--CTTCAGAGGTAAATGGCATATCTTCT-TGTCTATATAAGATTCCAACG 4746 Query 269494 GTACCTTTTTG 269504 || ||||| || Sbjct 4745 GTTCCTTTCTG 4735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267245850915332