Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq21128 109 3e-19
seq9033 104 1e-17
>seq21128
Length=23319
Score = 109 bits (120), Expect = 3e-19
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981
|| ||| ||| ||||||||||||||||||||| | || || || | || | |||||
Sbjct 15920 TCCACTCTCTTCATAAATAAATCTGGAATCCATAGCGCGTAGAAAAGGTCACGTGCTCTA 15979
Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041
||||||| ||||| ||||| || || ||| | |||| || | ||||| |||||||
Sbjct 15980 CTTTCTTCCTTTCCATGATTTTTACGTAAATCGAGCCAATCGAATACATCTGCGTGCCAT 16039
Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101
|| || | ||||| || ||| |||| |||||| || || ||||| ||||||||
Sbjct 16040 GGCTCAATGTAGATTGCGAAAGCACCTGGTCTTTTGTTCCCGCCCTGATCGACGTATCTA 16099
Query 26102 GCAGT 26106
|| ||
Sbjct 16100 GCGGT 16104
>seq9033
Length=2832
Score = 104 bits (114), Expect = 1e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981
|| ||| ||| |||||| |||||||||||||| | ||| || || | || | |||||
Sbjct 1688 TCCACTCTCTTCATAAACAAATCTGGAATCCATAGTGCGTAGAAAAGGTCACGTGCTCTA 1629
Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041
||||||| ||||| ||||| || | || | ||||||| | ||||| |||||||
Sbjct 1628 CTTTCTTCCTTTCCATGATTTTTACGCAAGTCGAGCCAATCAAATACATCTGCGTGCCAT 1569
Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101
|| || | ||||| || ||| ||| |||||| || |||||||| ||||||||
Sbjct 1568 GGCTCAATGTAGATTGCGAAAGCACCCGCTCTTTTGTTCCCGCCTTGATCAACGTATCTA 1509
Query 26102 GCAGT 26106
|| ||
Sbjct 1508 GCGGT 1504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252972896875925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |