Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq21128 109 3e-19 seq9033 104 1e-17 >seq21128 Length=23319 Score = 109 bits (120), Expect = 3e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| ||| ||||||||||||||||||||| | || || || | || | ||||| Sbjct 15920 TCCACTCTCTTCATAAATAAATCTGGAATCCATAGCGCGTAGAAAAGGTCACGTGCTCTA 15979 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 ||||||| ||||| ||||| || || ||| | |||| || | ||||| ||||||| Sbjct 15980 CTTTCTTCCTTTCCATGATTTTTACGTAAATCGAGCCAATCGAATACATCTGCGTGCCAT 16039 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || | ||||| || ||| |||| |||||| || || ||||| |||||||| Sbjct 16040 GGCTCAATGTAGATTGCGAAAGCACCTGGTCTTTTGTTCCCGCCCTGATCGACGTATCTA 16099 Query 26102 GCAGT 26106 || || Sbjct 16100 GCGGT 16104 >seq9033 Length=2832 Score = 104 bits (114), Expect = 1e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| ||| |||||| |||||||||||||| | ||| || || | || | ||||| Sbjct 1688 TCCACTCTCTTCATAAACAAATCTGGAATCCATAGTGCGTAGAAAAGGTCACGTGCTCTA 1629 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 ||||||| ||||| ||||| || | || | ||||||| | ||||| ||||||| Sbjct 1628 CTTTCTTCCTTTCCATGATTTTTACGCAAGTCGAGCCAATCAAATACATCTGCGTGCCAT 1569 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || | ||||| || ||| ||| |||||| || |||||||| |||||||| Sbjct 1568 GGCTCAATGTAGATTGCGAAAGCACCCGCTCTTTTGTTCCCGCCTTGATCAACGTATCTA 1509 Query 26102 GCAGT 26106 || || Sbjct 1508 GCGGT 1504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252972896875925