Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19418 84.2 3e-11 seq18860 82.4 9e-11 >seq19418 Length=20221 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 177574 ACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATG 177633 |||| |||||| || || || || | ||||| || || || | |||||||| | ||| Sbjct 17151 ACAGGGTGTGTTTCACCAGTAGCTAACACATAATCTTCTGCTGCATCTTGTTGTAACATT 17210 Query 177634 AGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCT 177677 ||||||| |||||||||| || |||||||||||||| ||||| Sbjct 17211 CTCCACATGCCTTCAACATAATCTTTGGCATGACCCCAATCTCT 17254 >seq18860 Length=11993 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 13547 ATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAG 13606 || |||||||| ||| ||||| || || || || || || || || | | | | Sbjct 10817 ATCACCGGTATCGTCAAATTGGAAGATGCCAATAACGCAGGGACCAAGAAAGCAGCAGAT 10758 Query 13607 TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCT 13666 ||||||||||| | || || || ||||| || ||| || | || ||||| || | || Sbjct 10757 TGTACTCTCATCTTAACGGAAGGAGATTCAGCCAAATCCTTGGCTGTTGCTGGATTATCG 10698 Query 13667 GTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA 13711 ||| | || |||||| | || ||||| ||||||||||| || ||| Sbjct 10697 GTCATCGGACGTGATAATTATGGTGTTTTCCCACTTCGTGGAAAA 10653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596407340525920