Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq18202 185 1e-41
seq19309 183 4e-41
seq20025 154 2e-32
seq19754 131 2e-25
seq20561 105 9e-18
seq12868 84.2 3e-11
>seq18202
Length=17611
Score = 185 bits (204), Expect = 1e-41
Identities = 207/277 (75%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770
||||||| || || ||||| ||||||| ||| || || ||||| || || ||||| ||||
Sbjct 15532 CAGTTGTCACCGTCCCTGCATACTTCAATGACTCTCAGCGACAAGCCACCAAGGATGCTG 15591
Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830
| || | ||||| ||| |||| | |||||||| ||||| || || || || || |
Sbjct 15592 GTTTGATCTCTGGTCTCAACATTCTTCGTATTATCAACGAACCTACCGCTGCCGCCATCG 15651
Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890
| || ||||| |||||||| | | | || ||||| | ||||| ||||| || |
Sbjct 15652 CCTACGGTCTTGACAAGAAGACCGTTGGTGAGCGCAATGTGCTCATCTTCGATCTTGGAG 15711
Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950
||||||| ||||||||||| || | | |||||| | ||||| || || || || || |
Sbjct 15712 GTGGTACTTTTGATGTCTCTCTCTTGACTATTGAGGAGGGTATCTTTGAGGTCAAAGCCA 15771
Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|||||||||| ||||| | |||||||||||||||||
Sbjct 15772 CTGCTGGTGACACTCACTTGGGTGGTGAAGATTTCGA 15808
Score = 174 bits (192), Expect = 2e-38
Identities = 186/246 (76%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357
|||| | ||||||||| | |||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 14973 AGCTGTCGGTATCGATCTCGGAACTACCTACTCTTGTGTCGGTGTATGGCAGAATGATCG 15032
Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417
||| || || || | || || ||||||||||| || || || || ||||| || || ||
Sbjct 15033 TGTTGAAATCATTGCCAACGATCAAGGAAACCGAACCACCCCTTCTTACGTCGCTTTCAC 15092
Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477
|| |||||| | | || || ||||| || ||||| || |||||||| |||
Sbjct 15093 TGACTCTGAACGATTGATCGGTGACGCCGCCAAGAATCAAGTGGCAATGAACCCACACAA 15152
Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGA 195537
|| || || ||||| |||||||| ||||||||||| || | ||| | | || |||||
Sbjct 15153 CACCGTTTTCGACGCCAAGCGTCTCATTGGTCGCAAATTCGCCGATGCGGATGTTCAAGA 15212
Query 195538 CGATAT 195543
||||||
Sbjct 15213 CGATAT 15218
Score = 159 bits (176), Expect = 5e-34
Identities = 291/421 (69%), Gaps = 10/421 (2%)
Strand=Plus/Plus
Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423
|||||| | ||||| || ||||| || || || || ||||| ||||| |||||||||||
Sbjct 16314 AACAAATCTATCAATCCCGATGAGGCTGTCGCCTACGGTGCCGCCGTCCAGGCTGCTATC 16373
Query 196424 CTCTCAGGTGTTGACAAT---AATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCC 196480
|| || || ||||| | | || |||||| ||||| || | |||||||| ||
Sbjct 16374 CTTTCCGG---TGACACTTCCGAGAAGACCCAAGACCTTCTCCTCTTGGATGTTGCGCCT 16430
Query 196481 GTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACA 196540
| || || ||| | || || || |||||||| | ||| | ||| | ||||||
Sbjct 16431 CTCTCGCTTGGTATCGAGACTGCCGGTGGTGTCTTCACTCCTCTCATTCCCCGAAACACA 16490
Query 196541 ACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTT 196600
|| ||||| | | ||| || || ||||| || |||| || ||||| |||||
Sbjct 16491 ACAATTCCCAACAGAAAGTGTGAAACATTCTCAACCTACACCGACAACCAACCCGGTGTC 16550
Query 196601 CATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG--AA 196658
| |||||||| | || || ||||| ||||| ||||||| ||||| || ||||| ||
Sbjct 16551 AACATTCAAGTCTTCGAGGGTGAACGTGCCCGTACAAAGGACAACCACCT-CTTGGGTAA 16609
Query 196659 CTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCT 196718
||| || | || || ||||| |||| || | |||||||| || || | || ||
Sbjct 16610 ATTT-GAACTCACTGGTATTCCTCCTGCTCCTCGTGGTGTTCCTCAAATCGAAGTCACCT 16668
Query 196719 TCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAAT 196778
||||| | || || || || || || ||||| | ||| |||||| | |||| ||||
Sbjct 16669 TCGATGTGGATGCCAACGGTATCCTCAACGTTTCTGCTTCCGACAAGACCACTGGTAAAT 16728
Query 196779 C 196779
|
Sbjct 16729 C 16729
Score = 116 bits (128), Expect = 5e-21
Identities = 180/257 (70%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120
||| | || || ||| | ||||| || ||||||||||| ||||||||||| || | |||
Sbjct 15944 GCTGTACGACGACTTCGAACTGCTTGCGAACGTGCCAAGCGAACTCTCTCATCCGCTGCT 16003
Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180
||||| | || |||||||| | || || || | |||||||| || || |||||
Sbjct 16004 CAAACCTCTATCGAAATTGATTCCCTTTTCGAGGGTGTCGACTTCTACACGTCTCTTACC 16063
Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240
|| || || || || || | | || ||||| || ||| |||||| ||||| ||
Sbjct 16064 CGGGCCCGATTCGAGGAACTCTGCCAAGACTTGTTCAGAAAGACTATGGAGCCTGTCGAG 16123
Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300
|||| | | || | ||||| || ||| | || ||| |||| ||||| | || ||
Sbjct 16124 AAAGTGTTGAGAGATTCCAAGATTGACAAGGCCAATGTTCATGAGATTGTATTGGTTGGT 16183
Query 196301 GGATCAACCCGTATTCC 196317
|| || |||||||| ||
Sbjct 16184 GGTTCCACCCGTATCCC 16200
>seq19309
Length=20099
Score = 183 bits (202), Expect = 4e-41
Identities = 164/206 (80%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942
||||| || ||||| || || || ||||| || || || ||||| ||||| ||| ||||
Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAG 1772
Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002
||||| || || || |||||||||||||| || ||||| ||||| || ||||||||||||
Sbjct 1773 GCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGT 1832
Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062
||||| || |||||||| || || |||||||||||||| | || ||||| || |||||
Sbjct 1833 AAACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTT 1892
Query 172063 CACCTTGTTCTAAGGCTTCGGGGTGG 172088
|| ||||| || | || || |||||
Sbjct 1893 CATCTTGTGCTCCGTCTACGTGGTGG 1918
Score = 178 bits (196), Expect = 2e-39
Identities = 164/208 (79%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941
||| || || || || ||||||||||||||||| || || || || || || || ||||
Sbjct 1134 CCTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAA 1193
Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001
|||||||||||||| || ||||| |||||||| || || ||||| || || ||||| ||
Sbjct 1194 GGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGG 1253
Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061
||||| |||||||||||||| ||||| || ||||||||| |||| ||||| || |||||
Sbjct 1254 AAAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCT 1313
Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| | || || | || || ||||||
Sbjct 1314 TCATTTGGTACTCCGTCTGCGTGGTGGT 1341
Score = 174 bits (192), Expect = 2e-38
Identities = 161/204 (79%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945
|||||||| || ||||| ||||| || || || || |||||||| || || |||| |||
Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489
Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005
||||||||||| ||||| || || || || ||||| ||||| ||||| ||||| || ||
Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549
Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065
|| |||||||| || || || |||||||| |||||| |||| || ||||| || || |||
Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609
Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089
| ||||| | ||||| ||||||
Sbjct 1610 TTGGTTCTTCGTCTTCGTGGTGGT 1633
Score = 170 bits (188), Expect = 3e-37
Identities = 153/191 (80%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942
|| ||||| || || ||||||||||| || ||||| || || ||||| || || |||||
Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060
Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002
||||||||||| || |||||||| || ||||| || || || ||| | || ||||| |||
Sbjct 2061 GCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGT 2120
Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062
||||| | ||||| || || || || || ||||||||| |||||||||||||||||||
Sbjct 2121 AAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTT 2180
Query 172063 CACCTTGTTCT 172073
|| |||| |||
Sbjct 2181 CA-CTTGGTCT 2190
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942
|| || || ||||||||||||||||||||||| || || ||||| ||||||||| ||||
Sbjct 787 CTCACCGGCAAAACTATCACCCTCGAGGTTGAATCTTCCGACACTATCGATAACGTCAAG 846
Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTT 171994
|||||||| || || || || || || || || || || ||||| | ||||
Sbjct 847 GCCAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAACAACGTTTGATTT 898
>seq20025
Length=28513
Score = 154 bits (170), Expect = 2e-32
Identities = 189/256 (74%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792
||||| ||| | ||||| ||||| || ||||| |||| | | || || ||| | |||
Sbjct 15639 CTTCAATGACGCTCAACGTCAGGCTACTAAGGATGCTGGTACGATCGCTGGTTTGAACGT 15698
Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAA 195852
|||| | || |||| || || || || || || ||||| |||||||| || |||| |||
Sbjct 15699 TCTTCGTATCGTCAACGAGCCCACCGCCGCCGCTATTGCCTATGGTCTTGATAAGACCAA 15758
Query 195853 GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912
|| ||| | ||| |||| ||| |||||| ||||||||||| || ||||| |||||
Sbjct 15759 GGGTGAACGTCAAATC--ATTG-TCTATGATCTTGGTGGTGGTACCTTCGATGTTTCACT 15815
Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972
|| || || | ||| | ||||| || |||||| ||||||||||| || | ||
Sbjct 15816 CCTTTCGATCGATGAGGGTGTGTTCGAGGTGTTGGCTACAGCTGGTGATACCCACTTGGG 15875
Query 195973 TGGTGAAGATTTCGAT 195988
||||||||||||||||
Sbjct 15876 TGGTGAAGATTTCGAT 15891
>seq19754
Length=10257
Score = 131 bits (144), Expect = 2e-25
Identities = 378/576 (66%), Gaps = 17/576 (3%)
Strand=Plus/Plus
Query 195636 AAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTA 195695
||||||| || | ||||| |||| || ||||||| || || || | | || |
Sbjct 4293 AAGAAATCTCTGCAATGGTCTTGACCAAACTGAAGGAAACCGCCGAGACCAAATTAGGCA 4352
Query 195696 AAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGG 195755
|| || || | ||||| | || || || |||||||||| ||| || || ||
Sbjct 4353 AAGAGGTCAAGAAGGCAGTCATTACCGTCCCCGCTTACTTCAATGACTCTCAGCGGTTAT 4412
Query 195756 CGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAA 195815
| || ||||| || | ||| ||||| ||||| || ||| | || ||||| || ||
Sbjct 4413 CTACCAAGGATGCCGGTGCCATTGCTGGTCTTGACGTTCTCCGTATCATCAACGAGCCTN 4472
Query 195816 CAGCGGCTGCAATTGCTTATGGTCTGGA------CA---AGAACAAGGAC--GAAG-ATA 195863
| || ||| || || || ||| ||| || |||| |||||| |||| |
Sbjct 4473 CCGCCGCT---ATCGCCTACGGTTTGGGTGAGGCCAGTGAGAAGAAGGACAAGAAGGAGC 4529
Query 195864 AAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTG 195923
| || |||||||| || | || |||||||| || ||||| || || ||| ||
Sbjct 4530 GCACCGTTTTGATCTTCGACTTGGGAGGTGGTACTTTCGATGTTTCTCTCCTCTCCATCA 4589
Query 195924 AAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATT 195983
||||| | || | || |||||||| ||||||||||| ||||| ||||| |||||||
Sbjct 4590 CCGGTGGGGTTTTTGCTGTCAAGGCTACCGCTGGTGATACCCATCTTGGTGGAGAAGATT 4649
Query 195984 TCGATGCACG-TCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGAT 196042
|||| ||| ||| | || || | || ||| ||||| | || | ||
Sbjct 4650 TCGA-CAACGCTCTCTTAGAGCACTTCAAAGCCGAATTCAAGCGAAAAACCAAACACGAC 4708
Query 196043 ATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGA 196102
|| ||| || | | |||||||| || || | | || ||||||||||||||||||
Sbjct 4709 ATCGATGGTGATGCCCGTGCTCTTCGACGTCTCCGTTCGGCCTGTGAACGTGCCAAACGA 4768
Query 196103 ACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGAC 196162
|| ||||| || | ||||| | || ||| | || || || || | || |||
Sbjct 4769 ACACTCTCCTCCGTCACCCAAACCACTGTCGAGGTCGACTCCTTATTCCAAGGTGCCGAC 4828
Query 196163 TTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198
|||| | || | || ||||||| ||||| || |||
Sbjct 4829 TTCTCTGCATCAATCTCCCGTGCTCGTTTCGAGGAG 4864
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357
|||||||||||||||| | ||||| |||||||| ||||| ||||| |||||||| |||||
Sbjct 3738 AGCTATTGGTATCGATCTCGGAACCACTTACTCCTGTGTGGGTGTCTGGCAAAACGATCG 3797
Query 195358 TGTAGAGATTATCCCGAATGACC 195380
|| ||||| || | |||||||
Sbjct 3798 AGTGGAGATCATTGCCAATGACC 3820
>seq20561
Length=8220
Score = 105 bits (116), Expect = 9e-18
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941
||| || || || || |||||||||||||| || | | ||||||||||| || | ||
Sbjct 5760 CCTCACGGGTAAGACCATCACCCTCGAGGTCGAAGCTGCCGACACAATCGACAATGTGAA 5819
Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTAT 171992
||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct 5820 GACCAAGATTCAAGAAAAGGAAGGCATTCCACCAGACCAACAACGACTTAT 5870
>seq12868
Length=7141
Score = 84.2 bits (92), Expect = 3e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 171995 TTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGT 172054
|||| || || ||||| |||||||| || || | ||||| |||||| | ||||||||||
Sbjct 5858 TTGCCGGAAAGCAGCTCGAAGATGGTCGCACTTTGGCTGACTACAACATCCAAAAGGAGT 5917
Query 172055 CTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
|||| || || ||||| || | |||||||||||
Sbjct 5918 CTACACTTCATCTTGTCCTTCGTCTTCGGGGTGG 5951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657683469650480
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