Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq18202 185 1e-41 seq19309 183 4e-41 seq20025 154 2e-32 seq19754 131 2e-25 seq20561 105 9e-18 seq12868 84.2 3e-11 >seq18202 Length=17611 Score = 185 bits (204), Expect = 1e-41 Identities = 207/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 ||||||| || || ||||| ||||||| ||| || || ||||| || || ||||| |||| Sbjct 15532 CAGTTGTCACCGTCCCTGCATACTTCAATGACTCTCAGCGACAAGCCACCAAGGATGCTG 15591 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830 | || | ||||| ||| |||| | |||||||| ||||| || || || || || | Sbjct 15592 GTTTGATCTCTGGTCTCAACATTCTTCGTATTATCAACGAACCTACCGCTGCCGCCATCG 15651 Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | || ||||| |||||||| | | | || ||||| | ||||| ||||| || | Sbjct 15652 CCTACGGTCTTGACAAGAAGACCGTTGGTGAGCGCAATGTGCTCATCTTCGATCTTGGAG 15711 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 ||||||| ||||||||||| || | | |||||| | ||||| || || || || || | Sbjct 15712 GTGGTACTTTTGATGTCTCTCTCTTGACTATTGAGGAGGGTATCTTTGAGGTCAAAGCCA 15771 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||||||||| ||||| | ||||||||||||||||| Sbjct 15772 CTGCTGGTGACACTCACTTGGGTGGTGAAGATTTCGA 15808 Score = 174 bits (192), Expect = 2e-38 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| | ||||||||| | |||||||| ||||| ||||| ||||||||||| |||||||| Sbjct 14973 AGCTGTCGGTATCGATCTCGGAACTACCTACTCTTGTGTCGGTGTATGGCAGAATGATCG 15032 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 ||| || || || | || || ||||||||||| || || || || ||||| || || || Sbjct 15033 TGTTGAAATCATTGCCAACGATCAAGGAAACCGAACCACCCCTTCTTACGTCGCTTTCAC 15092 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 || |||||| | | || || ||||| || ||||| || |||||||| ||| Sbjct 15093 TGACTCTGAACGATTGATCGGTGACGCCGCCAAGAATCAAGTGGCAATGAACCCACACAA 15152 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGA 195537 || || || ||||| |||||||| ||||||||||| || | ||| | | || ||||| Sbjct 15153 CACCGTTTTCGACGCCAAGCGTCTCATTGGTCGCAAATTCGCCGATGCGGATGTTCAAGA 15212 Query 195538 CGATAT 195543 |||||| Sbjct 15213 CGATAT 15218 Score = 159 bits (176), Expect = 5e-34 Identities = 291/421 (69%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423 |||||| | ||||| || ||||| || || || || ||||| ||||| ||||||||||| Sbjct 16314 AACAAATCTATCAATCCCGATGAGGCTGTCGCCTACGGTGCCGCCGTCCAGGCTGCTATC 16373 Query 196424 CTCTCAGGTGTTGACAAT---AATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCC 196480 || || || ||||| | | || |||||| ||||| || | |||||||| || Sbjct 16374 CTTTCCGG---TGACACTTCCGAGAAGACCCAAGACCTTCTCCTCTTGGATGTTGCGCCT 16430 Query 196481 GTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACA 196540 | || || ||| | || || || |||||||| | ||| | ||| | |||||| Sbjct 16431 CTCTCGCTTGGTATCGAGACTGCCGGTGGTGTCTTCACTCCTCTCATTCCCCGAAACACA 16490 Query 196541 ACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTT 196600 || ||||| | | ||| || || ||||| || |||| || ||||| ||||| Sbjct 16491 ACAATTCCCAACAGAAAGTGTGAAACATTCTCAACCTACACCGACAACCAACCCGGTGTC 16550 Query 196601 CATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG--AA 196658 | |||||||| | || || ||||| ||||| ||||||| ||||| || ||||| || Sbjct 16551 AACATTCAAGTCTTCGAGGGTGAACGTGCCCGTACAAAGGACAACCACCT-CTTGGGTAA 16609 Query 196659 CTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCT 196718 ||| || | || || ||||| |||| || | |||||||| || || | || || Sbjct 16610 ATTT-GAACTCACTGGTATTCCTCCTGCTCCTCGTGGTGTTCCTCAAATCGAAGTCACCT 16668 Query 196719 TCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAAT 196778 ||||| | || || || || || || ||||| | ||| |||||| | |||| |||| Sbjct 16669 TCGATGTGGATGCCAACGGTATCCTCAACGTTTCTGCTTCCGACAAGACCACTGGTAAAT 16728 Query 196779 C 196779 | Sbjct 16729 C 16729 Score = 116 bits (128), Expect = 5e-21 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||| | || || ||| | ||||| || ||||||||||| ||||||||||| || | ||| Sbjct 15944 GCTGTACGACGACTTCGAACTGCTTGCGAACGTGCCAAGCGAACTCTCTCATCCGCTGCT 16003 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 ||||| | || |||||||| | || || || | |||||||| || || ||||| Sbjct 16004 CAAACCTCTATCGAAATTGATTCCCTTTTCGAGGGTGTCGACTTCTACACGTCTCTTACC 16063 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 || || || || || || | | || ||||| || ||| |||||| ||||| || Sbjct 16064 CGGGCCCGATTCGAGGAACTCTGCCAAGACTTGTTCAGAAAGACTATGGAGCCTGTCGAG 16123 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 |||| | | || | ||||| || ||| | || ||| |||| ||||| | || || Sbjct 16124 AAAGTGTTGAGAGATTCCAAGATTGACAAGGCCAATGTTCATGAGATTGTATTGGTTGGT 16183 Query 196301 GGATCAACCCGTATTCC 196317 || || |||||||| || Sbjct 16184 GGTTCCACCCGTATCCC 16200 >seq19309 Length=20099 Score = 183 bits (202), Expect = 4e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 ||||| || ||||| || || || ||||| || || || ||||| ||||| ||| |||| Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAG 1772 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 ||||| || || || |||||||||||||| || ||||| ||||| || |||||||||||| Sbjct 1773 GCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGT 1832 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 ||||| || |||||||| || || |||||||||||||| | || ||||| || ||||| Sbjct 1833 AAACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTT 1892 Query 172063 CACCTTGTTCTAAGGCTTCGGGGTGG 172088 || ||||| || | || || ||||| Sbjct 1893 CATCTTGTGCTCCGTCTACGTGGTGG 1918 Score = 178 bits (196), Expect = 2e-39 Identities = 164/208 (79%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || || || || ||||||||||||||||| || || || || || || || |||| Sbjct 1134 CCTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAA 1193 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||||||||| || ||||| |||||||| || || ||||| || || ||||| || Sbjct 1194 GGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGG 1253 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 ||||| |||||||||||||| ||||| || ||||||||| |||| ||||| || ||||| Sbjct 1254 AAAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCT 1313 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || || | || || |||||| Sbjct 1314 TCATTTGGTACTCCGTCTGCGTGGTGGT 1341 Score = 174 bits (192), Expect = 2e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 |||||||| || ||||| ||||| || || || || |||||||| || || |||| ||| Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||||||||| ||||| || || || || ||||| ||||| ||||| ||||| || || Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 || |||||||| || || || |||||||| |||||| |||| || ||||| || || ||| Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 | ||||| | ||||| |||||| Sbjct 1610 TTGGTTCTTCGTCTTCGTGGTGGT 1633 Score = 170 bits (188), Expect = 3e-37 Identities = 153/191 (80%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || ||||| || || ||||||||||| || ||||| || || ||||| || || ||||| Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 ||||||||||| || |||||||| || ||||| || || || ||| | || ||||| ||| Sbjct 2061 GCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGT 2120 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 ||||| | ||||| || || || || || ||||||||| ||||||||||||||||||| Sbjct 2121 AAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTT 2180 Query 172063 CACCTTGTTCT 172073 || |||| ||| Sbjct 2181 CA-CTTGGTCT 2190 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || ||||||||||||||||||||||| || || ||||| ||||||||| |||| Sbjct 787 CTCACCGGCAAAACTATCACCCTCGAGGTTGAATCTTCCGACACTATCGATAACGTCAAG 846 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTT 171994 |||||||| || || || || || || || || || || ||||| | |||| Sbjct 847 GCCAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAACAACGTTTGATTT 898 >seq20025 Length=28513 Score = 154 bits (170), Expect = 2e-32 Identities = 189/256 (74%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792 ||||| ||| | ||||| ||||| || ||||| |||| | | || || ||| | ||| Sbjct 15639 CTTCAATGACGCTCAACGTCAGGCTACTAAGGATGCTGGTACGATCGCTGGTTTGAACGT 15698 Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAA 195852 |||| | || |||| || || || || || || ||||| |||||||| || |||| ||| Sbjct 15699 TCTTCGTATCGTCAACGAGCCCACCGCCGCCGCTATTGCCTATGGTCTTGATAAGACCAA 15758 Query 195853 GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912 || ||| | ||| |||| ||| |||||| ||||||||||| || ||||| ||||| Sbjct 15759 GGGTGAACGTCAAATC--ATTG-TCTATGATCTTGGTGGTGGTACCTTCGATGTTTCACT 15815 Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972 || || || | ||| | ||||| || |||||| ||||||||||| || | || Sbjct 15816 CCTTTCGATCGATGAGGGTGTGTTCGAGGTGTTGGCTACAGCTGGTGATACCCACTTGGG 15875 Query 195973 TGGTGAAGATTTCGAT 195988 |||||||||||||||| Sbjct 15876 TGGTGAAGATTTCGAT 15891 >seq19754 Length=10257 Score = 131 bits (144), Expect = 2e-25 Identities = 378/576 (66%), Gaps = 17/576 (3%) Strand=Plus/Plus Query 195636 AAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTA 195695 ||||||| || | ||||| |||| || ||||||| || || || | | || | Sbjct 4293 AAGAAATCTCTGCAATGGTCTTGACCAAACTGAAGGAAACCGCCGAGACCAAATTAGGCA 4352 Query 195696 AAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGG 195755 || || || | ||||| | || || || |||||||||| ||| || || || Sbjct 4353 AAGAGGTCAAGAAGGCAGTCATTACCGTCCCCGCTTACTTCAATGACTCTCAGCGGTTAT 4412 Query 195756 CGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAA 195815 | || ||||| || | ||| ||||| ||||| || ||| | || ||||| || || Sbjct 4413 CTACCAAGGATGCCGGTGCCATTGCTGGTCTTGACGTTCTCCGTATCATCAACGAGCCTN 4472 Query 195816 CAGCGGCTGCAATTGCTTATGGTCTGGA------CA---AGAACAAGGAC--GAAG-ATA 195863 | || ||| || || || ||| ||| || |||| |||||| |||| | Sbjct 4473 CCGCCGCT---ATCGCCTACGGTTTGGGTGAGGCCAGTGAGAAGAAGGACAAGAAGGAGC 4529 Query 195864 AAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTG 195923 | || |||||||| || | || |||||||| || ||||| || || ||| || Sbjct 4530 GCACCGTTTTGATCTTCGACTTGGGAGGTGGTACTTTCGATGTTTCTCTCCTCTCCATCA 4589 Query 195924 AAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATT 195983 ||||| | || | || |||||||| ||||||||||| ||||| ||||| ||||||| Sbjct 4590 CCGGTGGGGTTTTTGCTGTCAAGGCTACCGCTGGTGATACCCATCTTGGTGGAGAAGATT 4649 Query 195984 TCGATGCACG-TCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGAT 196042 |||| ||| ||| | || || | || ||| ||||| | || | || Sbjct 4650 TCGA-CAACGCTCTCTTAGAGCACTTCAAAGCCGAATTCAAGCGAAAAACCAAACACGAC 4708 Query 196043 ATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGA 196102 || ||| || | | |||||||| || || | | || |||||||||||||||||| Sbjct 4709 ATCGATGGTGATGCCCGTGCTCTTCGACGTCTCCGTTCGGCCTGTGAACGTGCCAAACGA 4768 Query 196103 ACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGAC 196162 || ||||| || | ||||| | || ||| | || || || || | || ||| Sbjct 4769 ACACTCTCCTCCGTCACCCAAACCACTGTCGAGGTCGACTCCTTATTCCAAGGTGCCGAC 4828 Query 196163 TTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198 |||| | || | || ||||||| ||||| || ||| Sbjct 4829 TTCTCTGCATCAATCTCCCGTGCTCGTTTCGAGGAG 4864 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||||||||||||||| | ||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct 3738 AGCTATTGGTATCGATCTCGGAACCACTTACTCCTGTGTGGGTGTCTGGCAAAACGATCG 3797 Query 195358 TGTAGAGATTATCCCGAATGACC 195380 || ||||| || | ||||||| Sbjct 3798 AGTGGAGATCATTGCCAATGACC 3820 >seq20561 Length=8220 Score = 105 bits (116), Expect = 9e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || || || || |||||||||||||| || | | ||||||||||| || | || Sbjct 5760 CCTCACGGGTAAGACCATCACCCTCGAGGTCGAAGCTGCCGACACAATCGACAATGTGAA 5819 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTAT 171992 ||||||||||||| ||||||||||||||||| || || ||||||||||| Sbjct 5820 GACCAAGATTCAAGAAAAGGAAGGCATTCCACCAGACCAACAACGACTTAT 5870 >seq12868 Length=7141 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 171995 TTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGT 172054 |||| || || ||||| |||||||| || || | ||||| |||||| | |||||||||| Sbjct 5858 TTGCCGGAAAGCAGCTCGAAGATGGTCGCACTTTGGCTGACTACAACATCCAAAAGGAGT 5917 Query 172055 CTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| || || ||||| || | ||||||||||| Sbjct 5918 CTACACTTCATCTTGTCCTTCGTCTTCGGGGTGG 5951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657683469650480