Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq19309 118 2e-21 >seq19309 Length=20099 Score = 118 bits (130), Expect = 2e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 192322 CGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTC 192380 || || || || || | ||||| ||| ||| || || || ||||| | | |||||| | Sbjct 2194 CGCAAGACCAAGTGAAGAGTAGACTCCTTTTGA-ATGTTGTAATCGGCAAGTGTTCGCCC 2136 Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440 || |||||||||||||| ||||||||||||| |||||| || ||||| || ||||| || Sbjct 2135 GTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTT 2076 Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500 || || || || ||| ||||| || | ||| || || || ||||| || || || Sbjct 2075 GTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGAT 2016 Query 192501 GGTTTTACCAGT 192512 ||| |||||||| Sbjct 2015 GGTCTTACCAGT 2004 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | ||| | || || |||||| |||||| Sbjct 1921 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCA 1862 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| |||| ||||||||||||||| || | | |||||||| || Sbjct 1861 GCGAGTGTGCGACCATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGG 1802 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| || || || || | || || ||||| Sbjct 1801 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCG 1742 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || || ||||| |||||||| || Sbjct 1741 ACCTCCAGCGTAATTGTTTTACCGGT 1716 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | || | |||||| || || || ||| Sbjct 1635 ATACCACCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCA 1576 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | ||| || || |||||||| | | ||||||||||| Sbjct 1575 GCGAGAGTTCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGA 1516 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || ||||| || | || || ||||| Sbjct 1515 GGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCG 1456 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||||| ||||| ||||| || ||||| || Sbjct 1455 ACTTCGAGAGTGATGGTCTTTCCAGTCAA 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984205539589650