Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 123 2e-23
>seq19309
Length=20099
Score = 123 bits (136), Expect = 2e-23
Identities = 153/207 (74%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784
|| || ||||| || || || |||||||| || | | || ||| | || | || |||
Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060
Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844
||||| || ||||| ||||| || || || || ||||| || || |||||||| ||
Sbjct 2061 GCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGT 2120
Query 24845 AAACAGCTGGAGGATTCGAGAA-ACATGTCAGATTATAACATTCAAAAGGAATCGACACT 24903
||||| |||| || | ||| || || | ||||| |||||||||||||| || || ||
Sbjct 2121 AAACAATTGGAAGACGGGCGAACACTTGCC-GATTACAACATTCAAAAGGAGTCTACTCT 2179
Query 24904 ACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||| |||||||| || |||||
Sbjct 2180 TCACTTGGTCTTGCGATTACGTGGAGG 2206
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784
|| ||||| || || || || ||||| || ||| | |||| || | || | || ||
Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194
Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844
||||| |||||||||||||| || || || || ||||||||| | |||||||||||
Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254
Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904
||||| || || ||| | | | || | ||||| |||||||| |||||||| || ||
Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314
Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930
|| ||||| | || |||| || ||
Sbjct 1315 CATTTGGTACTCCGTCTGCGTGGTGG 1340
Score = 111 bits (122), Expect = 1e-19
Identities = 143/190 (75%), Gaps = 7/190 (4%)
Strand=Plus/Plus
Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAA 24783
|| ||||||||||| |||||||| || || ||| | ||||||| | || |||| ||
Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAG 1772
Query 24784 ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGG 24843
| ||| ||||| ||||| ||||| || || || |||||||||||| |||| ||||| ||
Sbjct 1773 GCCAAA-ATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGG 1831
Query 24844 GAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901
||||| ||||| ||| ||| | || | | ||||| || || || |||||||| ||
Sbjct 1832 TAAACAACTGGAAGATGGTCG-CACAC-TCGCTGATTACAATATCCAGAAGGAATCAACT 1889
Query 24902 CTACA-CTTG 24910
|| || ||||
Sbjct 1890 CTTCATCTTG 1899
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
|| || || || || || |||||||| ||| || |||||||| | || | || ||
Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||| |||||||| || || || ||||| |||||||||||| | |||||||| || ||
Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| || || || ||| | | || || |||||||| || || || || || |||
Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609
Query 24908 TTGGT 24912
|||||
Sbjct 1610 TTGGT 1614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449775233476520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |