Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq19309 123 2e-23 >seq19309 Length=20099 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || ||||| || || || |||||||| || | | || ||| | || | || ||| Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||| || ||||| ||||| || || || || ||||| || || |||||||| || Sbjct 2061 GCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGT 2120 Query 24845 AAACAGCTGGAGGATTCGAGAA-ACATGTCAGATTATAACATTCAAAAGGAATCGACACT 24903 ||||| |||| || | ||| || || | ||||| |||||||||||||| || || || Sbjct 2121 AAACAATTGGAAGACGGGCGAACACTTGCC-GATTACAACATTCAAAAGGAGTCTACTCT 2179 Query 24904 ACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| |||||||| || ||||| Sbjct 2180 TCACTTGGTCTTGCGATTACGTGGAGG 2206 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || ||||| || || || || ||||| || ||| | |||| || | || | || || Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||| |||||||||||||| || || || || ||||||||| | ||||||||||| Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| || || ||| | | | || | ||||| |||||||| |||||||| || || Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| | || |||| || || Sbjct 1315 CATTTGGTACTCCGTCTGCGTGGTGG 1340 Score = 111 bits (122), Expect = 1e-19 Identities = 143/190 (75%), Gaps = 7/190 (4%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAA 24783 || ||||||||||| |||||||| || || ||| | ||||||| | || |||| || Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAG 1772 Query 24784 ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGG 24843 | ||| ||||| ||||| ||||| || || || |||||||||||| |||| ||||| || Sbjct 1773 GCCAAA-ATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGG 1831 Query 24844 GAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 ||||| ||||| ||| ||| | || | | ||||| || || || |||||||| || Sbjct 1832 TAAACAACTGGAAGATGGTCG-CACAC-TCGCTGATTACAATATCCAGAAGGAATCAACT 1889 Query 24902 CTACA-CTTG 24910 || || |||| Sbjct 1890 CTTCATCTTG 1899 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || || || || |||||||| ||| || |||||||| | || | || || Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| || || || ||||| |||||||||||| | |||||||| || || Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || || ||| | | || || |||||||| || || || || || ||| Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609 Query 24908 TTGGT 24912 ||||| Sbjct 1610 TTGGT 1614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449775233476520