Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq19309 86.0 1e-11 >seq19309 Length=20099 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 146055 ACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAA 146113 || || ||||||||||| | || || ||| ||| ||| || || | || || || Sbjct 1716 ACCGGTAAAACAATTACGCTGGAGGTCGAATCAT-CCGACACGATCGACAACGTCAAGGC 1774 Query 146114 TAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAA 146173 ||||| || || ||||||||||| || ||||||||| | || |||||||| ||||| Sbjct 1775 CAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAA 1834 Query 146174 ACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233 |||| | || ||| | | || | | ||||| ||||| || || ||||| ||| | || Sbjct 1835 ACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTTCA 1894 Query 146234 T 146234 | Sbjct 1895 T 1895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| ||| || || || || ||||| || ||||| || ||| Sbjct 2040 GATACAATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAA 2099 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||||||||||||||| || || |||| | | ||||| || Sbjct 2100 CAGCGATTAATCTTTGCAGGTAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAAC 2159 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAA 146261 || ||||| || || ||| | || || || || |||||| | |||||| || Sbjct 2160 ATTCAAAAGGAGTCTACTCTTCACTTGGTCTTGCGATTACGTGGAGGTCAA 2210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785952572566280