Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 86.0 1e-11
>seq19309
Length=20099
Score = 86.0 bits (94), Expect = 1e-11
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 146055 ACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAA 146113
|| || ||||||||||| | || || ||| ||| ||| || || | || || ||
Sbjct 1716 ACCGGTAAAACAATTACGCTGGAGGTCGAATCAT-CCGACACGATCGACAACGTCAAGGC 1774
Query 146114 TAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAA 146173
||||| || || ||||||||||| || ||||||||| | || |||||||| |||||
Sbjct 1775 CAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGTAA 1834
Query 146174 ACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233
|||| | || ||| | | || | | ||||| ||||| || || ||||| ||| | ||
Sbjct 1835 ACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTTCA 1894
Query 146234 T 146234
|
Sbjct 1895 T 1895
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| | ||||| ||| || || || || ||||| || ||||| || |||
Sbjct 2040 GATACAATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAA 2099
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
|| || | || ||||||||||||||||| || || |||| | | ||||| ||
Sbjct 2100 CAGCGATTAATCTTTGCAGGTAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAAC 2159
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAA 146261
|| ||||| || || ||| | || || || || |||||| | |||||| ||
Sbjct 2160 ATTCAAAAGGAGTCTACTCTTCACTTGGTCTTGCGATTACGTGGAGGTCAA 2210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785952572566280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |